forked from plazi/TaxPub
-
Notifications
You must be signed in to change notification settings - Fork 0
/
base-test3.dtd
714 lines (598 loc) · 36.3 KB
/
base-test3.dtd
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
<!-- ============================================================= -->
<!-- MODULE: DTD to Test the Base Suite -->
<!-- VERSION: 3.0 -->
<!-- DATE: Feb 2008 -->
<!-- -->
<!-- ============================================================= -->
<!-- ============================================================= -->
<!-- PUBLIC DOCUMENT TYPE DEFINITION -->
<!-- TYPICAL INVOCATION -->
<!--
"-//NLM//DTD Journal Archiving DTD to Test the Base Suite v3.0 20080202//EN"
Not delivered, but named file "base-test3.dtd" -->
<!-- ============================================================= -->
<!-- ============================================================= -->
<!-- SYSTEM: Journal Archiving and Interchange DTD of the -->
<!-- Archiving and Interchange DTD Suite -->
<!-- -->
<!-- PURPOSE: Fake DTD to test changes to base modules. It has -->
<!-- no over-rides and no customization. -->
<!-- -->
<!-- CONTAINS: All the base modules to make sure they parse , -->
<!-- Suite modules this DTD might invoke -->
<!-- -->
<!-- CREATED FOR: -->
<!-- Digital Archive of Journal Articles -->
<!-- National Center for Biotechnology Information -->
<!-- (NCBI) -->
<!-- National Library of Medicine (NLM) -->
<!-- -->
<!-- ORIGINAL CREATION DATE: -->
<!-- October 2004 -->
<!-- -->
<!-- CREATED BY: Deborah Lapeyre (Mulberry Technologies, Inc.) -->
<!-- ============================================================= -->
<!-- ============================================================= -->
<!-- DTD VERSION/CHANGE HISTORY -->
<!-- ============================================================= -->
<!--
=============================================================
Version Reason/Occasion (who) vx.x (yyyy-mm-dd)
=============================================================
Version 3.0 (DAL/BTU) v3.0 (2007-10-31)
Version 3.0 is the first non-backward-compatible release.
In addition to the usual incremental changes, some
elements and attributes have been renamed and/or remodeled
to better meet user needs and to increase tag set consistency.
All module change histories are available through the Tag Suite
web site at http://dtd.nlm.nih.gov.
Details on version 3.0 are available at
http://dtd.nlm.nih.gov/3.0.
1. Updated public identifier to "v3.0 20080202//EN" -->
<!-- ============================================================= -->
<!-- MODULES OF MODULES INVOKED -->
<!-- ============================================================= -->
<!-- MODULE TO NAME THE MODULES -->
<!-- Declares all the external modules that are
part of the modular Journal Archiving and
Interchange DTD Suite library. Thus it does
NOT declare itself; the DTD-specific
module-of-modules; any DTD-specific class,
mix, or model over-ride modules; or any new
new content modules specific to this DTD.
Those are declared in the DTD-specific
module of modules.
Since this module declares but does not
invoke modules, this DTD then invokes any
modules it uses by referencing the external
Parameter Entities defined in the Module of
Modules. To include a set of elements (such
as all the lists or the MathML elements) this
module defines the external Parameter Entity
for the module(s) that contains the MathML
declarations and the DTD references that
entity. -->
<!ENTITY % modules.ent PUBLIC
"-//NLM//DTD Archiving and Interchange DTD Suite Module of Modules v3.0 20080202//EN"
"modules3.ent" >
%modules.ent;
<!-- ============================================================= -->
<!-- CUSTOMIZATION MODULES INVOKED -->
<!-- Note: These modules must be called after -->
<!-- all Module of Modules but before any other -->
<!-- modules. Unlike any other grouping, order -->
<!-- of these modules matters. -->
<!-- ============================================================= -->
<!-- DEFAULT ELEMENT CLASSES MODULE -->
<!-- Names the module that holds the standard
class definitions for the Journal Archiving
and Interchange DTD Suite. -->
%default-classes.ent;
<!-- DEFAULT MIX CUSTOMIZATIONS MODULE -->
<!-- Names the module that holds the standard
mix definitions for the Journal Archiving
and Interchange DTD Suite. -->
%default-mixes.ent;
<!-- ============================================================= -->
<!-- COMMON (SHARED) ELEMENTS MODULE INVOKED -->
<!-- ============================================================= -->
<!-- COMMON (SHARED) DECLARATIONS -->
<!-- Declarations for elements, attributes,
entities, and Notations that are shared by
more than one class module. Note: Must be
called before any of the class modules. -->
%common.ent;
<!-- ============================================================= -->
<!-- THE REST OF THE EXTERNAL MODULES INVOKED -->
<!-- ============================================================= -->
<!-- XHTML TABLE SETUP MODULE -->
<!-- Set up the necessary Parameter Entity values
and then invoke XHTML (HTML 4.0) table
module -->
%XHTMLtablesetup.ent;
<!-- MATHML SETUP MODULE -->
<!-- Invoke the MathML modules -->
%mathmlsetup.ent;
<!-- SPECIAL CHARACTERS DECLARATIONS -->
<!-- Standard XML special character entities
used in this DTD -->
%xmlspecchars.ent;
<!-- ============================================================= -->
<!-- JOURNAL ARTICLE CLASS ELEMENTS (alpha) -->
<!-- ============================================================= -->
<!-- ARTICLE METADATA ELEMENTS -->
%articlemeta.ent;
<!-- BACK MATTER ELEMENTS -->
%backmatter.ent;
<!-- DISPLAY (GRAPHICAL) ELEMENTS -->
%display.ent;
<!-- FORMATTING ELEMENT CLASSES -->
<!-- Elements that change rendition/display. -->
%format.ent;
<!-- FUNDING ELEMENTS -->
<!-- Elements that describe the sponsorship or
open access -->
%funding.ent;
<!-- JOURNAL METADATA ELEMENTS -->
%journalmeta.ent;
<!-- LINK CLASS ELEMENTS -->
%link.ent;
<!-- LIST CLASS ELEMENTS -->
%list.ent;
<!-- MATH ELEMENTS -->
%math.ent;
<!-- PARAGRAPH-LEVEL ELEMENTS -->
%para.ent;
<!-- PHRASE-LEVEL ELEMENTS -->
%phrase.ent;
<!-- BIBLIOGRAPHIC REFERENCE (CITATION)
CLASS ELEMENTS -->
%references.ent;
<!-- RELATED OBJECT ELEMENT -->
<!-- Defines the <related-object> element to
describe a related object such as a
related book or a dataset. -->
%related-object.ent;
<!-- SECTION ELEMENTS -->
%section.ent;
<!-- CUSTOM SPECIAL CHARACTERS DECLARATIONS -->
<!-- Custom special character entities created
specifically for use in this DTD Suite -->
%chars.ent;
<!-- NOTATION DECLARATIONS MODULE -->
%notat.ent;
<!-- ============================================================= -->
<!-- PARAMETER ENTITIES FOR ATTRIBUTE LISTS -->
<!-- ============================================================= -->
<!-- DTD VERSION -->
<!-- What version of this DTD was used to make
the document instance under consideration.
Note that this is a fixed value that should
change every time the DTD changes versions or
revisions. -->
<!ENTITY % dtd-version
"dtd-version
CDATA #FIXED '3.0'" >
<!-- ARTICLE ATTRIBUTES -->
<!-- Attributes for the top-level element
<article> -->
<!ENTITY % article-atts
"article-type
CDATA #IMPLIED
%dtd-version;
xml:lang NMTOKEN 'en'
%XLINK.xmlns.attrib;
%MATHML.xmlns.attrib;
%Schema.xmlns.attrib;" >
<!-- SUB-ARTICLE ATTRIBUTES -->
<!-- Attributes for the <response> element -->
<!ENTITY % sub-article-atts
"article-type
CDATA #IMPLIED
id ID #IMPLIED
xml:lang NMTOKEN 'en'" >
<!-- RESPONSE ATTRIBUTES -->
<!-- Attributes for the <response> element -->
<!ENTITY % response-atts
"response-type
CDATA #IMPLIED
id ID #IMPLIED
xml:lang NMTOKEN 'en'" >
<!-- ============================================================= -->
<!-- JOURNAL ARTICLE ELEMENTS -->
<!-- ============================================================= -->
<!-- ARTICLE MODEL (LIMITED) -->
<!ENTITY % article-short-model
"(front, body?, back?)" >
<!-- ARTICLE MODEL WITH SUBARTICLE OR RESPONSE -->
<!ENTITY % article-full-model
"(front, body?, back?,
(sub-article* | response*) )" >
<!-- ARTICLE -->
<!-- The complete content of a journal article.
An article is potentially divided into
four (more typically three) parts: 1) the
Front Matter (article metadata or header),
the body of the article (main content), any
ancillary information such as a glossary or
appendix, and (the least common) a
response, that is a commentary on the
article itself. -->
<!ELEMENT article %article-full-model; >
<!-- article-type
What kind of article is this?
Note: When the article is a commentary on
another article, for example a correction or
addendum, this attribute is metadata for the
commentary itself, it does NOT define the
kind of article that is being corrected or
amended.
This is an optional CDATA attribute, but
an article type should be identified if
possible. Potential values include:
abstract The article itself is an
abstract (of a paper or
presentation), usually that
has been presented or published
separately.
addendum A published item that adds
additional information or
clarification to another item
Similar value "correction"
corrects an error in previously
published material
announcement
Material announced in the
publication (may or may not be
directly related to the pub)
article-commentary
An item whose subject or focus
is another article or articles;
this article comments on the
other article(s) (For example,
for a controversial article, the
editors of the publication
might invite an author of the
opposing opinion to comment on
the first article, and publish
the two together.)
book-review
Review or analysis of one or more
printed or online books (Note
that product reviews are a
separate type.)
books-received
Notification of items such as
books that have been received
by the publication for review
or other consideration
brief-report
A short and/or rapid announcement
of research results
calendar A list of events
case-report
Case study, case report, or other
description of a case
collection This value should only be used
to describe articles whose
intellectual content appears
primarily in the <sub-article>
correction A modification, or
correction of previously
published material (sometimes
called "errata") Similar value
"addendum" merely adds to
previously published material
discussion Invited discussion related to a
specific article or issue
editorial Opinion piece, policy statement,
or general commentary, typically
written by staff of the
publication. Note: similar value
"article-commentary" is reserved
for a commentary on a specific
article or articles.
in-brief Summary of items in the current
issue
introduction
An introduction to the
publication, a series of articles
within the publication, etc.,
typically for a special section
or issue
letter Letter to the publication,
typically commenting upon a
published item
meeting-report
Report of a conference,
symposium, or meeting
news News item
obituary Announcement of a death or
appreciation of a colleague
who has recently died
oration Reprint of a speech or oral
presentation
other Not any of the article types
explicitly named in this list
product-review
Description, analysis, or review
of a product or service, for
example a software package (note
that book review is a separate
type)
reply Reply to a letter or commentary,
typically by the original
author commenting upon the
comments
research-article
Research article
retraction Retraction of previously
published material
review-article
Review or state-of-the-art
summary article
dtd-version
Which version of the DTD does this article
use? The value is a #FIXED attribute, so
the entire attribute definition is defined
in a Parameter Entity, so the next version
of the DTD can use a different #FIXED value.
xml:lang The language in which the value of the
element is expressed. Recommended best
practice is to use values as defined in
RFC 1766, typically 2-letter language
codes such as "fr" (French), "en" (English),
and "de" (German). These values are NOT
case sensitive, so "EN" = "en".
Processing and Conversion Note: All other
xml:lang attributes within the article
inherit the value set on <article> unless
explicitly set themselves with their own
"xml:lang" attribute.
xmlns Set up the pseudo-attributes for the
namespaces for any namespaces used in this
DTD. XLink and MathML are set up in the
MathML modules. These xmlns are called
here because certain older tools will not
work properly with namespaces unless they
are declared on the top level element.
The PEs are defined in the MathML modules. -->
<!ATTLIST article
%article-atts; >
<!-- ============================================================= -->
<!-- FRONT MATTER ELEMENTS -->
<!-- ============================================================= -->
<!-- FRONT MATTER MODEL -->
<!ENTITY % front-model "(journal-meta?, article-meta,
(%list.class; | %front-back.class;)* )" >
<!-- FRONT MATTER -->
<!-- The metadata concerning an article, such as
the name and issue of the journal in which it
appears and the name and author(s) of the
article.
In some journal DTDs this is called the
header information, and it includes metadata
concerning the journal <journal-meta> and
metadata concerning the issue of the journal
and the individual article <article-meta>. -->
<!ELEMENT front %front-model; >
<!-- ============================================================= -->
<!-- BODY ELEMENTS -->
<!-- ============================================================= -->
<!-- BODY MODEL -->
<!-- Content model for the Body (main textual
content) of a journal article. -->
<!ENTITY % body-model "((%para-level;)*, (%sec-level;)*,
sig-block?)" >
<!-- BODY OF THE ARTICLE -->
<!-- The main textual portion of the article that
conveys the content. -->
<!ELEMENT body %body-model; >
<!-- ============================================================= -->
<!-- BACK MATTER ELEMENTS -->
<!-- ============================================================= -->
<!-- BACK MATTER MODEL -->
<!-- Content model for the Back Matter (ancillary
material such as appendices) of a journal
article. -->
<!ENTITY % back-model "(label?, title*,
(%doc-back-matter-mix;)* )" >
<!-- BACK MATTER -->
<!-- Ancillary or supporting material not included
as part of the main textual content of a
journal article, for example appendices and
acknowledgments. -->
<!ELEMENT back %back-model; >
<!-- ============================================================= -->
<!-- SUBARTICLE -->
<!-- ============================================================= -->
<!-- SUBARTICLE -->
<!-- An article that is completely contained
inside another article. Both the article and
the subarticle have their own metadata. The
article has at very least journal and issue
information and start and end pages; it may
have a title, author, or other metadata.
The subarticle has its own, independent
metadata, such as authors, that it
may not share with the article that
encloses it.
Conversion Note: "Superarticles" that contain
other articles rarely contain much content of
their own, perhaps just a title and
introductory paragraph.
Authoring Note: This construction is NOT to
be used for an article and its response, or
for a series of responses, even if the
original article to which the responses are
replying is elsewhere. -->
<!ELEMENT sub-article %article-full-model; >
<!-- article-type
What kind of article is this?
Note: When the article is a commentary on
another article, for example a correction or
addendum, this attribute is metadata for the
commentary itself, it does NOT define the
kind of article that is being corrected or
amended.
Authoring Note: All articles
should have types assigned if possible.
abstract The article itself is an
abstract (of a paper or
presentation), usually that
has been presented or published
separately.
addendum A published item that adds
additional information or
clarification to another item
Similar value "correction"
corrects an error in previously
published material
announcement
Material announced in the
publication (may or may not be
directly related to the pub)
article-commentary
An item whose subject or focus
is another article or articles;
this article comments on the
other article(s) (For example,
for a controversial article, the
editors of the publication
might invite an author of the
opposing opinion to comment on
the first article, and publish
the two together.)
book-review
Review or analysis of one or more
printed or online books (Note
that product reviews are a
separate type.)
books-received
Notification of items such as
books that have been received
by the publication for review
or other consideration
brief-report
A short and/or rapid announcement
of research results
calendar A list of events
case-report
Case study, case report, or other
description of a case
correction A modification, or
correction of previously
published material (sometimes
called "errata") Similar value
"addendum" merely adds to
previously published material
discussion Invited discussion related to a
specific article or issue
editorial Opinion piece, policy statement,
or general commentary, typically
written by staff of the
publication. Note: similar value
"article-commentary" is reserved
for a commentary on a specific
article or articles.
in-brief Summary of items in the current
issue
introduction
An introduction to the
publication, a series of articles
within the publication, etc.,
typically for a special section
or issue
letter Letter to the publication,
typically commenting upon a
published item
meeting-report
Report of a conference,
symposium, or meeting
news News item
obituary Announcement of a death or
appreciation of a colleague
who has recently died
oration Reprint of a speech or oral
presentation
other Not any of the article types
explicitly named in this list
product-review
Description, analysis, or review
of a product or service, for
example a software package (note
that book review is a separate
type)
reply Reply to a letter or commentary,
typically by the original
author commenting upon the
comments
research-article
Research article
retraction Retraction of previously
published material
review-article
Review or state-of-the-art
summary article
translation Translation of an article
originally produced in a
different language
xml:lang The language in which the value of the
element is expressed. Recommended best
practice is to use values as defined in
RFC 1766, typically 2-letter language
codes such as "fr" (French), "en" (English),
and "de" (German). These values are NOT
case sensitive, so "EN" = "en". T
Processing and Conversion Note: All other
xml:lang attributes within the article
inherit the value set on <article> unless
explicitly set themselves with their own
"xml:lang" attribute. -->
<!ATTLIST sub-article
%sub-article-atts; >
<!-- ============================================================= -->
<!-- RESPONSE ELEMENTS -->
<!-- ============================================================= -->
<!-- RESPONSE -->
<!-- Reply, response, or commentary concerning the
journal article. In the typical case, the
response is included in the same XML package
as the original article, and thus attached
at the end of the article proper.
Authoring Note: Frequently a reply or
response is an article in its own right, not
included as part of the original article.
Such an article could use the
<related-article> element in the article
metadata to record the metadata for the
original article.
Conversion Note: This construction can also
be used for the pathological case, rarely
seen, in which several responses to an
article are lumped together into a single
container which is not the original article,
merely a collection of responses. In one
example we examined, the first two responses
were to an original article which was else-
where and the third response was a response
to the first two responses. -->
<!ELEMENT response %article-short-model; >
<!-- response-type
What kind of response is this?
Note: This does NOT define the kind of
article on which the response is commenting,
it is metadata for the response itself.
Suggested values include:
addendum Adds additional information or
clarification to the parent
article
discussion Discussion related to a specific
issue described in the parent
article
reply Reply to the parent article.
This is the most commonly used
value. -->
<!ATTLIST response
%response-atts; >
<!-- ================== End Journal Archiving and Interchange DTD -->