setup.py

from setuptools import setup
import os
import shutil

VERSION = '1.2.14'

#remove the dist folder first if exists
if os.path.exists("dist"):
	shutil.rmtree("dist")

def readme():
	this_directory = os.path.abspath(os.path.dirname(__file__))
	with open(os.path.join(this_directory, 'README.md'), encoding='latin-1') as f:
		long_description = f.read()
		return(long_description)

def write_version_py(filename='SigProfilerMatrixGenerator/version.py'):
	# Copied from numpy setup.py
	cnt = """
# THIS FILE IS GENERATED FROM SIGPROFILEMATRIXGENERATOR SETUP.PY
short_version = '%(version)s'
version = '%(version)s'
Update = 'v1.2.14: Resolve issues with rn6 and yeast. Add basic SBS tests.'
	
	"""
	fh = open(filename, 'w')
	fh.write(cnt % {'version': VERSION,})
	fh.close()

write_version_py()

setup(name='SigProfilerMatrixGenerator',
		version=VERSION,
		description='SigProfiler matrix generator tool',
		long_description= readme(),
		long_description_content_type='text/markdown',
		url='https://github.com/AlexandrovLab/SigProfilerMatrixGenerator.git',
		author='Erik Bergstrom',
		author_email='ebergstr@eng.ucsd.edu',
		license='UCSD',
		packages=['SigProfilerMatrixGenerator'],
		python_requires='>=3.8',
		install_requires =[
			"matplotlib>=2.2.2",
			"sigProfilerPlotting>=1.3.11",
			"statsmodels>=0.9.0",
			"scipy>=1.1.0",
			"numpy>=1.18.5",
			"pandas>=0.23.4"],
		include_package_data=True,
		zip_safe=False)