From 0a5c8d9cff00814eb28431427d14079a61341127 Mon Sep 17 00:00:00 2001 From: Darnell Granberry <40174000+DarnellGranberry@users.noreply.github.com> Date: Tue, 12 Nov 2024 15:25:57 -0500 Subject: [PATCH] Update README.md Update readme for v0.3.0 --- README.md | 8 ++++++++ 1 file changed, 8 insertions(+) diff --git a/README.md b/README.md index b46da67..4d019fe 100644 --- a/README.md +++ b/README.md @@ -9,6 +9,14 @@ A pipeline for particle detection in cryo-electron microscopy images using convo **Check out our [Discussion](https://github.com/tbepler/topaz/discussions) section for general help, suggestions, and tips on using Topaz. You can also find our documentation site [here](https://topaz-em.readthedocs.io/en/latest/?badge=latest).** +## New in v0.3.0 +- Major refactoring of logic out of commands for modularity +- Refactored datasets and sampling allow larger training sets with mixed micrograph sizes +- Particle extraction can now be performed in patches +- Topaz train now additionally reports adjusted_precision, as a proportion of the theoretical max precision (pi) +- Can now read long argument lists using "@list_of_many_files.txt" in place of filenames or wildcards (thanks to [#192](https://github.com/tbepler/topaz/pull/192) from @nfrasser) +- Various bug fixes + ## New in v0.2.5 - Added Relion integration scripts - Topaz extract can now write particle coordinates to one file per input micrograph