From acdbf3530e0a9eed0126f6928213552529fbc490 Mon Sep 17 00:00:00 2001
From: Shing Zhan <shing.zhan@gmail.com>
Date: Tue, 12 Sep 2023 19:26:20 +0100
Subject: [PATCH] Remove unused flag

---
 python/tests/beagle_numba.py | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/python/tests/beagle_numba.py b/python/tests/beagle_numba.py
index c96f24a9a0..7b925c1c44 100644
--- a/python/tests/beagle_numba.py
+++ b/python/tests/beagle_numba.py
@@ -333,7 +333,7 @@ def get_map_alleles(allele_probs):
 
 
 @njit
-def run_beagle(ref_h, query_h, pos, miscall_rate=0.0001, ne=1e6, debug=False):
+def run_beagle(ref_h, query_h, pos, miscall_rate=0.0001, ne=1e6):
     """
     Run a simplified version of the BEAGLE imputation algorithm
     based on Equation 1 of BB2016.
@@ -353,7 +353,6 @@ def run_beagle(ref_h, query_h, pos, miscall_rate=0.0001, ne=1e6, debug=False):
     :param numpy.ndarray pos: Site positions of all the markers.
     :param float miscall_rate: Allelic miscall rate.
     :param int ne: Effective population size.
-    :param bool debug: Whether to print intermediate results.
     :return: Imputed alleles and interpolated allele probabilities.
     :rtype: list(numpy.ndarray, numpy.ndarray)
     """