From 6ada6baba3830cb53cc13c72b23601f60dcc823d Mon Sep 17 00:00:00 2001 From: Shing Zhan Date: Tue, 5 Mar 2024 13:42:44 +0000 Subject: [PATCH] Add new section --- python/tests/beagle_numba.py | 3 +++ 1 file changed, 3 insertions(+) diff --git a/python/tests/beagle_numba.py b/python/tests/beagle_numba.py index 4f72e69222..59b7e67205 100644 --- a/python/tests/beagle_numba.py +++ b/python/tests/beagle_numba.py @@ -341,6 +341,9 @@ def compute_emission_probability(mismatch_prob, is_match, *, num_alleles=2): return em_prob +""" Replication of BEAGLE's implementation of the Li and Stephens HMM. """ + + @njit def compute_forward_matrix( ref_h, query_h, trans_probs, mismatch_probs, *, num_alleles=2