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WIP: allelic Rsqured Release #522: Commit 9b66c9b pushed by szhan
February 25, 2024 12:34 25s test_imputation
test_imputation
February 25, 2024 12:34 25s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE Release #521: Commit 6f448f4 pushed by szhan
February 23, 2024 16:10 39s test_imputation
test_imputation
February 23, 2024 16:10 39s
Comment out threshold Release #520: Commit c3e0218 pushed by szhan
February 23, 2024 16:01 28s test_imputation
test_imputation
February 23, 2024 16:01 28s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE Release #519: Commit 0d91e00 pushed by szhan
February 23, 2024 14:21 25s test_imputation
test_imputation
February 23, 2024 14:21 25s
Further renaming of variables Release #518: Commit 8555e69 pushed by szhan
February 23, 2024 14:20 26s test_imputation
test_imputation
February 23, 2024 14:20 26s
Further renaming of variables Release #517: Commit 9bc2ea1 pushed by szhan
February 23, 2024 14:15 27s test_imputation
test_imputation
February 23, 2024 14:15 27s
Change variable names Release #516: Commit b17659a pushed by szhan
February 23, 2024 14:06 46s test_imputation
test_imputation
February 23, 2024 14:06 46s
Rename variables Release #515: Commit fe5f645 pushed by szhan
February 23, 2024 14:00 33s test_imputation
test_imputation
February 23, 2024 14:00 33s
Rename get_mutation_rates to get_transition_probs Release #514: Commit 870d172 pushed by szhan
February 23, 2024 13:57 32s test_imputation
test_imputation
February 23, 2024 13:57 32s
Rename get_mutation_rates to get_mismatch_probs Release #513: Commit 1c2e37b pushed by szhan
February 23, 2024 13:54 30s test_imputation
test_imputation
February 23, 2024 13:54 30s
WIP: Print results to VCF Release #512: Commit 6a2035d pushed by szhan
February 20, 2024 16:09 32s test_imputation
test_imputation
February 20, 2024 16:09 32s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE Release #511: Commit fad3b8d pushed by szhan
February 19, 2024 15:58 30s test_imputation
test_imputation
February 19, 2024 15:58 30s
Use tskit constant for missing data Release #510: Commit 0192155 pushed by szhan
February 19, 2024 15:58 27s test_imputation
test_imputation
February 19, 2024 15:58 27s
Use tskit constant Release #509: Commit f53c008 pushed by szhan
February 19, 2024 15:55 29s test_imputation
test_imputation
February 19, 2024 15:55 29s
Minor variable renaming Release #508: Commit b1643e9 pushed by szhan
February 5, 2024 20:19 28s test_imputation
test_imputation
February 5, 2024 20:19 28s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE Release #507: Commit 10ad737 pushed by szhan
February 5, 2024 18:50 56s test_imputation
test_imputation
February 5, 2024 18:50 56s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE Release #506: Commit dd09b27 pushed by szhan
February 5, 2024 17:28 29s test_imputation
test_imputation
February 5, 2024 17:28 29s
Add assertions to check on weights Release #505: Commit 8930b1e pushed by szhan
February 5, 2024 15:38 1m 49s test_imputation
test_imputation
February 5, 2024 15:38 1m 49s
Handle markers before first genotyped marker correctly Release #504: Commit 984b840 pushed by szhan
February 5, 2024 15:37 34s test_imputation
test_imputation
February 5, 2024 15:37 34s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE Release #503: Commit 24934ef pushed by szhan
January 30, 2024 12:44 26s test_imputation
test_imputation
January 30, 2024 12:44 26s
Minor refactor Release #502: Commit be752e7 pushed by szhan
January 30, 2024 12:43 30s test_imputation
test_imputation
January 30, 2024 12:43 30s
Minor refactor Release #501: Commit 433f12d pushed by szhan
January 30, 2024 12:42 28s test_imputation
test_imputation
January 30, 2024 12:42 28s
Add warnings about allele encoding Release #500: Commit 665b105 pushed by szhan
January 30, 2024 12:41 28s test_imputation
test_imputation
January 30, 2024 12:41 28s
Use MISSING variable Release #499: Commit 7b64e64 pushed by szhan
January 25, 2024 12:42 40s test_imputation
test_imputation
January 25, 2024 12:42 40s
Add tests to check LS HMM of _tskit.lshmm compared to BEAGLE Release #498: Commit 6143bbe pushed by szhan
January 25, 2024 12:13 36s test_imputation
test_imputation
January 25, 2024 12:13 36s