From 9b602acbf760c369d29e27103d2959c3175a22aa Mon Sep 17 00:00:00 2001 From: szhan Date: Wed, 19 Jun 2024 14:51:33 +0100 Subject: [PATCH] Update --- README.md | 12 ++++++++---- 1 file changed, 8 insertions(+), 4 deletions(-) diff --git a/README.md b/README.md index 486abca..036a719 100644 --- a/README.md +++ b/README.md @@ -16,12 +16,16 @@ Note that there are two special values `NONCOPY` and `MISSING`. `NONCOPY` (or `- * Recombination probabilities. * Mutation probabilities. -### Algorithms -* Forward-backward algorithm using the haploid LS HMM. -* Viterbi algorithm using the diploid LS HMM. +### Models and algorithms +* Haploid LS HMM + * Forward-backward algorithm + * Viterbi algorithm +* Diploid LS HMM + * Forward-backward algorithm + * Viterbi algorithm ### Features * Scaling of mutation rate by the number of distinct alleles per site. * Non-copiable state in the reference panel (`NONCOPY`). * Missing state in the query (`MISSING`). -* Multiallelic sites. +* Multiallelic sites (haploid only).