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Menqu

Mendjan Lab qPCR analysis script

Install

Install the script

  • pip3 install https://github.com/syntonym/qpcr_analysis/releases/download/3.2.2/menqu-3.2.2-py3-none-any.whl

  • echo PATH='$PATH':$HOME/Library/Python/3.9/bin >> ~/.bash_profile

  • echo export PATH >> ~/.bash_profile

Then restart your terminal.

You should now be able to execute the script via menqu.

For SVG export you also need to install geckodriver and make sure firefox is available on your command line. One easy way to do that is to install miniconda and execute

conda install -c conda-forge firefox geckodriver

Install Develop

Creating a python virtual environment

python -m venv env

Activating a python virtual environment (in bash)

source env/bin/activate

Change the directory into the package directory where setup.py is located. Install a package in developer mode

INSTALL_ON_LINUX=1 pip install --editable .

INSTALL_ON_LINUX=1 is needded to install xlwings on linux, by default it does not install. xlwings is needed to run menqu, but is only used during excel import.

Install missing dependencies:

pip install pyqt5 pyqtwebengine

For to me unknown reasons listing these two dependencies installs the wrong ones, where as installing them manually afterwards works.