diff --git a/data/multimercluster.sh b/data/multimercluster.sh index 6aaefc1f..e3939797 100644 --- a/data/multimercluster.sh +++ b/data/multimercluster.sh @@ -125,7 +125,7 @@ BASEIN=$(basename "${INPUT}") # Shift _h, _h.dbtype if notExists "${TMP_PATH}/multimer_db_h.dbtype"; then # shellcheck disable=SC2086 - "$MMSEQS" lndb "${INPUT}" "${TMP_PATH}/${BASEIN}tmp" ${VERBOSITY} \ + "$MMSEQS" lndb "${INPUT}" "${TMP_PATH}/${BASEIN}tmp" ${VERBOSITY_PAR} \ || fail "lndb died" # shellcheck disable=SC2086 diff --git a/data/structdatabases.sh b/data/structdatabases.sh index 599b1f09..aba06ab4 100644 --- a/data/structdatabases.sh +++ b/data/structdatabases.sh @@ -212,10 +212,10 @@ case "${INPUT_TYPE}" in for SUFFIX in "" "_ss" "_h" "_ca"; do if [ -e "${IN}_seq${SUFFIX}.dbtype" ]; then # shellcheck disable=SC2086 - "${MMSEQS}" mvdb "${IN}_seq${SUFFIX}" "${OUTDB}_seq${SUFFIX}" || fail "mv died" + "${MMSEQS}" mvdb "${IN}_seq${SUFFIX}" "${OUTDB}_seq${SUFFIX}" ${VERB_PAR} || fail "mv died" fi # shellcheck disable=SC2086 - "${MMSEQS}" mvdb "${IN}${SUFFIX}" "${OUTDB}${SUFFIX}" || fail "mv died" + "${MMSEQS}" mvdb "${IN}${SUFFIX}" "${OUTDB}${SUFFIX}" ${VERB_PAR} || fail "mv died" done if [ -e "${IN}_clu.dbtype" ]; then @@ -229,7 +229,7 @@ case "${INPUT_TYPE}" in done # shellcheck disable=SC2086 - "${MMSEQS}" mvdb "${IN}_clu" "${OUTDB}_clu" || fail "mv died" + "${MMSEQS}" mvdb "${IN}_clu" "${OUTDB}_clu" ${VERB_PAR} || fail "mv died" fi ;; esac diff --git a/data/structureiterativesearch.sh b/data/structureiterativesearch.sh index 1dbb8e43..a6ba1d66 100644 --- a/data/structureiterativesearch.sh +++ b/data/structureiterativesearch.sh @@ -45,7 +45,8 @@ while [ "$STEP" -lt "$NUM_IT" ]; do # shellcheck disable=SC2086 "$MMSEQS" subtractdbs "$TMP_PATH/pref_tmp_${STEP}" "$TMP_PATH/aln_${STEPONE}" "$TMP_PATH/pref_${STEP}" $SUBSTRACT_PAR \ || fail "Substract died" - "$MMSEQS" rmdb "$TMP_PATH/pref_tmp_${STEP}" + # shellcheck disable=SC2086 + "$MMSEQS" rmdb "$TMP_PATH/pref_tmp_${STEP}" ${VERBOSITY} fi touch "$TMP_PATH/pref_${STEP}.done" fi