diff --git a/easybuild/easyconfigs/s/SNPTEST/SNPTEST-2.5.6.eb b/easybuild/easyconfigs/s/SNPTEST/SNPTEST-2.5.6.eb new file mode 100644 index 00000000000..a404d99e468 --- /dev/null +++ b/easybuild/easyconfigs/s/SNPTEST/SNPTEST-2.5.6.eb @@ -0,0 +1,33 @@ +easyblock = 'Tarball' + +name = 'SNPTEST' +version = '2.5.6' + +homepage = 'https://www.chg.ox.ac.uk/~gav/snptest/' +description = """SNPTEST is a program for the analysis of single SNP association in genome-wide studies. + The tests implemented include + + Binary (case-control) phenotypes, single and multiple quantitative phenotypes + Bayesian and Frequentist tests + Ability to condition upon an arbitrary set of covariates and/or SNPs. + Various different methods for the dealing with imputed SNPs. +""" + +toolchain = SYSTEM + +source_urls = ['https://www.well.ox.ac.uk/~gav/resources/'] +sources = ['snptest_v2.5.6_CentOS_Linux7.8-x86_64_dynamic.tgz'] +checksums = ['c2c829def961dd2f6377c388d8aa22cab17945961c47e39c4a94493466c0a52e'] + +postinstallcmds = ["cd %(installdir)s && ln -s snptest_v2.5.6 snptest"] + +sanity_check_paths = { + 'files': ['LICENCE'], + 'dirs': ['doc', 'example'], +} + +modextrapaths = {'PATH': ''} + +sanity_check_commands = ["snptest -help"] + +moduleclass = 'bio'