No module named config

[jdimech]

Just set up a conda environment for FAST. Trying to run the following command:

$ python run_fp.py -c config.json

Encountering the following error:

Fingerprinting ../parameters/fingerprint/fp_input_CI_TPC_EHZ.json
Traceback (most recent call last):
File "gen_fp.py", line 5, in
from config import *
ModuleNotFoundError: No module named 'config'

Any ideas what is causing this problem? Probably a very simple solution. Thanks.

[kexinrong]

Thanks for reporting this! I just pushed a fix for this problem (i was from a previous commit error). Let me know whether the fix works for you.

[jdimech]

Thanks for quick reply! It's a step in the right direction but the program is still generating errors for me:

Fingerprinting ../parameters/fingerprint/fp_input_CI_TPC_EHZ.json
/nas/active/ops/nmp/research/jesse/FAST/fingerprint/feature_extractor.py:172: SyntaxWarning: "is" with a literal. Did you mean "=="?
if type is 'MAD':
/nas/active/ops/nmp/research/jesse/FAST/fingerprint/feature_extractor.py:186: SyntaxWarning: "is" with a literal. Did you mean "=="?
if type is 'Zscore':
/nas/active/ops/nmp/research/jesse/FAST/fingerprint/feature_extractor.py:192: SyntaxWarning: "is" with a literal. Did you mean "=="?
if type is 'Zscore':
/nas/active/ops/nmp/research/jesse/FAST/fingerprint/feature_extractor.py:195: SyntaxWarning: "is" with a literal. Did you mean "=="?
elif type is 'MAD':
Traceback (most recent call last):
File "MAD.py", line 10, in
from feature_extractor import *
File "/nas/active/ops/nmp/research/jesse/FAST/fingerprint/feature_extractor.py", line 19, in
from scipy.misc import imresize
ImportError: cannot import name 'imresize' from 'scipy.misc' (/nas/active/ops/nmp/research/jesse/anaconda3/envs/fast/lib/python3.8/site-packages/scipy/misc/init.py)
Traceback (most recent call last):
File "finger_print.py", line 7, in
from feature_extractor import *
File "/nas/active/ops/nmp/research/jesse/FAST/fingerprint/feature_extractor.py", line 19, in
from scipy.misc import imresize
ImportError: cannot import name 'imresize' from 'scipy.misc' (/nas/active/ops/nmp/research/jesse/anaconda3/envs/fast/lib/python3.8/site-packages/scipy/misc/init.py)
sh: ../data/waveformsTPC/fingerprints/TPC.EHZ.fp: No such file or directory
sh: ../data/waveformsTPC/timestamps/TPC.EHZ.ts: No such file or directory
Traceback (most recent call last):
File "gen_fp.py", line 60, in
num_lines = sum(1 for line in open(ts_file))
FileNotFoundError: [Errno 2] No such file or directory: '../data/waveformsTPC/timestamps/ts_Deci5.Pick.19991015130000.CI.TPC.EHZ.sac'
Processing for MAD

I installed the older pre-python 3 version of FAST in a separate conda environment and that command seems to work as it should with no errors or warnings.

Also I think the dependency "sklearn" in requirements.txt should be "scikit-learn", unless I am mistaken?

Thanks again for your help

[kexinrong]

It seems that the imresize function was removed in scipy 1.3.0. You might want to downgrade scipy to an earlier version, or use the new function instead. For reference, I was testing using scipy version 1.1.0.