From 88b95de3fa830f7aa06a9f1b168a52b51c3fd1da Mon Sep 17 00:00:00 2001 From: n-kall Date: Tue, 6 Aug 2024 10:19:46 +0300 Subject: [PATCH] render docs --- man/ess_basic.Rd | 2 +- man/ess_bulk.Rd | 2 +- man/ess_quantile.Rd | 2 +- man/ess_sd.Rd | 2 +- man/ess_tail.Rd | 2 +- man/mcse_quantile.Rd | 2 +- man/mcse_sd.Rd | 2 +- man/rhat.Rd | 2 +- man/rhat_basic.Rd | 2 +- man/rhat_nested.Rd | 10 +++++----- 10 files changed, 14 insertions(+), 14 deletions(-) diff --git a/man/ess_basic.Rd b/man/ess_basic.Rd index 47aeec0e..8d485bd6 100755 --- a/man/ess_basic.Rd +++ b/man/ess_basic.Rd @@ -64,7 +64,7 @@ Hall/CRC. Aki Vehtari, Andrew Gelman, Daniel Simpson, Bob Carpenter, and Paul-Christian Bürkner (2021). Rank-normalization, folding, and localization: An improved R-hat for assessing convergence of -MCMC (with discussion). \emph{Bayesian Data Analysis}. 16(2), 667-–718. +MCMC (with discussion). \emph{Bayesian Analysis}. 16(2), 667-–718. doi:10.1214/20-BA1221 Aki Vehtari (2021). Comparison of MCMC effective sample size estimators. diff --git a/man/ess_bulk.Rd b/man/ess_bulk.Rd index 8baada5c..37206b6d 100755 --- a/man/ess_bulk.Rd +++ b/man/ess_bulk.Rd @@ -57,7 +57,7 @@ ess_bulk(d$Sigma) Aki Vehtari, Andrew Gelman, Daniel Simpson, Bob Carpenter, and Paul-Christian Bürkner (2021). Rank-normalization, folding, and localization: An improved R-hat for assessing convergence of -MCMC (with discussion). \emph{Bayesian Data Analysis}. 16(2), 667-–718. +MCMC (with discussion). \emph{Bayesian Analysis}. 16(2), 667-–718. doi:10.1214/20-BA1221 Aki Vehtari (2021). Comparison of MCMC effective sample size estimators. diff --git a/man/ess_quantile.Rd b/man/ess_quantile.Rd index f919ad60..4da4635d 100755 --- a/man/ess_quantile.Rd +++ b/man/ess_quantile.Rd @@ -69,7 +69,7 @@ ess_quantile(d$mu, probs = c(0.1, 0.9)) Aki Vehtari, Andrew Gelman, Daniel Simpson, Bob Carpenter, and Paul-Christian Bürkner (2021). Rank-normalization, folding, and localization: An improved R-hat for assessing convergence of -MCMC (with discussion). \emph{Bayesian Data Analysis}. 16(2), 667-–718. +MCMC (with discussion). \emph{Bayesian Analysis}. 16(2), 667-–718. doi:10.1214/20-BA1221 } \seealso{ diff --git a/man/ess_sd.Rd b/man/ess_sd.Rd index 91278bf8..16015ed8 100755 --- a/man/ess_sd.Rd +++ b/man/ess_sd.Rd @@ -54,7 +54,7 @@ ess_sd(d$Sigma) Aki Vehtari, Andrew Gelman, Daniel Simpson, Bob Carpenter, and Paul-Christian Bürkner (2021). Rank-normalization, folding, and localization: An improved R-hat for assessing convergence of -MCMC (with discussion). \emph{Bayesian Data Analysis}. 16(2), 667-–718. +MCMC (with discussion). \emph{Bayesian Analysis}. 16(2), 667-–718. doi:10.1214/20-BA1221 } \seealso{ diff --git a/man/ess_tail.Rd b/man/ess_tail.Rd index 36b2772c..9e87d8f1 100755 --- a/man/ess_tail.Rd +++ b/man/ess_tail.Rd @@ -57,7 +57,7 @@ ess_tail(d$Sigma) Aki Vehtari, Andrew Gelman, Daniel Simpson, Bob Carpenter, and Paul-Christian Bürkner (2021). Rank-normalization, folding, and localization: An improved R-hat for assessing convergence of -MCMC (with discussion). \emph{Bayesian Data Analysis}. 16(2), 667-–718. +MCMC (with discussion). \emph{Bayesian Analysis}. 16(2), 667-–718. doi:10.1214/20-BA1221 Aki Vehtari (2021). Comparison of MCMC effective sample size estimators. diff --git a/man/mcse_quantile.Rd b/man/mcse_quantile.Rd index 4651181e..a7617a0a 100755 --- a/man/mcse_quantile.Rd +++ b/man/mcse_quantile.Rd @@ -66,7 +66,7 @@ mcse_quantile(d$mu) Aki Vehtari, Andrew Gelman, Daniel Simpson, Bob Carpenter, and Paul-Christian Bürkner (2021). Rank-normalization, folding, and localization: An improved R-hat for assessing convergence of -MCMC (with discussion). \emph{Bayesian Data Analysis}. 16(2), 667-–718. +MCMC (with discussion). \emph{Bayesian Analysis}. 16(2), 667-–718. doi:10.1214/20-BA1221 } \seealso{ diff --git a/man/mcse_sd.Rd b/man/mcse_sd.Rd index 02f86ebd..726faeb1 100755 --- a/man/mcse_sd.Rd +++ b/man/mcse_sd.Rd @@ -54,7 +54,7 @@ mcse_sd(d$Sigma) Aki Vehtari, Andrew Gelman, Daniel Simpson, Bob Carpenter, and Paul-Christian Bürkner (2021). Rank-normalization, folding, and localization: An improved R-hat for assessing convergence of -MCMC (with discussion). \emph{Bayesian Data Analysis}. 16(2), 667-–718. +MCMC (with discussion). \emph{Bayesian Analysis}. 16(2), 667-–718. doi:10.1214/20-BA1221 J. F. Kenney & E. S. Keeping (1951). \emph{Mathematics of Statistics, Vol. II.} diff --git a/man/rhat.Rd b/man/rhat.Rd index 263561cd..6af3b66b 100755 --- a/man/rhat.Rd +++ b/man/rhat.Rd @@ -54,7 +54,7 @@ rhat(d$Sigma) Aki Vehtari, Andrew Gelman, Daniel Simpson, Bob Carpenter, and Paul-Christian Bürkner (2021). Rank-normalization, folding, and localization: An improved R-hat for assessing convergence of -MCMC (with discussion). \emph{Bayesian Data Analysis}. 16(2), 667-–718. +MCMC (with discussion). \emph{Bayesian Analysis}. 16(2), 667-–718. doi:10.1214/20-BA1221 } \seealso{ diff --git a/man/rhat_basic.Rd b/man/rhat_basic.Rd index 762cce0f..04f47433 100755 --- a/man/rhat_basic.Rd +++ b/man/rhat_basic.Rd @@ -62,7 +62,7 @@ Hall/CRC. Aki Vehtari, Andrew Gelman, Daniel Simpson, Bob Carpenter, and Paul-Christian Bürkner (2021). Rank-normalization, folding, and localization: An improved R-hat for assessing convergence of -MCMC (with discussion). \emph{Bayesian Data Analysis}. 16(2), 667-–718. +MCMC (with discussion). \emph{Bayesian Analysis}. 16(2), 667-–718. doi:10.1214/20-BA1221 } \seealso{ diff --git a/man/rhat_nested.Rd b/man/rhat_nested.Rd index 9f91ad05..71f51195 100644 --- a/man/rhat_nested.Rd +++ b/man/rhat_nested.Rd @@ -45,7 +45,7 @@ passing the draws array for that element of the \code{\link{rvar}} to this funct } \description{ Compute the nested Rhat convergence diagnostic for a single -variable as proposed in Margossian et al. (2023). +variable as proposed in Margossian et al. (2024). } \details{ Nested Rhat is a convergence diagnostic useful when @@ -56,8 +56,8 @@ point. Note that there is a slight difference in the calculation of Rhat and nested Rhat, as nested Rhat is lower bounded by 1. This means that nested Rhat with one chain per superchain will not be -exactly equal to basic Rhat (see Footnote 1 in Margossian et -al. (2023)). +exactly equal to basic Rhat (see Footnote 3 in Margossian et +al. (2024)). } \examples{ mu <- extract_variable_matrix(example_draws(), "mu") @@ -69,9 +69,9 @@ rhat_nested(d$Sigma, superchain_ids = c(1, 1, 2, 2)) } \references{ Charles C. Margossian, Matthew D. Hoffman, Pavel Sountsov, Lionel -Riou-Durand, Aki Vehtari and Andrew Gelman (2023). Nested R-hat: +Riou-Durand, Aki Vehtari and Andrew Gelman (2024). Nested R-hat: Assessing the convergence of Markov chain Monte Carlo when running -many short chains. arxiv:arXiv:2110.13017 (version 4) +many short chains. \emph{Bayesian Analysis}. doi:10.1214/24-BA1453 } \seealso{ Other diagnostics: