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Genome Assembly SOP #5

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hyphaltip opened this issue Dec 13, 2020 · 0 comments

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enhancement help wanted

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hyphaltip commented Dec 13, 2020

Demonstrate how to filter sequence reads for quality
Run FASTQC for validation and describe an actions to take
Run AAFTF for simple runs and default parameters
Run SPADes alone
Run Platanus, Redundans, dipSPAdes for diploid assemblers
Evaluate Assemblies with BUSCO and QUAST

hyphaltip added enhancement help wanted labels

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