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1. electroporation_modeling electroporation_modeling Public

   Bayesian survival analysis of electroporation times from coarse grained molecular dynamics simulations performed by Dr. Lea Rems.

   Jupyter Notebook

2. string-method-swarms-trajectories string-method-swarms-trajectories Public

   Forked from delemottelab/string-method-swarms-trajectories

   An implementation of the string method using GROMACS' python API

   Python

3. Informing_NMR_experiments_w_MD Informing_NMR_experiments_w_MD Public

   Code for: Informing NMR experiments with molecular dynamics simulations to characterize the dominant open state of KcsA. https://doi.org/10.1101/2020.12.14.422800

   Jupyter Notebook 1

4. charmm-gui-gmx-AMBER-SLIPIDS charmm-gui-gmx-AMBER-SLIPIDS Public

   If you have trouble combining CHARMM-GUI + GROMACS and the AMBER-FF with SLipids this repo is here to help.

   Makefile 1 2

5. folding_at_home_scripts folding_at_home_scripts Public

   This repostiory contains my scripts and notebooks to handle folding@home data

   Jupyter Notebook 2

6. My_Thesis My_Thesis Public

   My thesis with its latex template.

   TeX