From 5a1e582a7d0848f59383c613a483e8d70e7e4fdb Mon Sep 17 00:00:00 2001
From: Tyler Desjardins <desjard@stsci.edu>
Date: Mon, 3 Jun 2024 15:09:09 -0400
Subject: [PATCH] Updated aperture photometry notebook for s3fs and fixed misc
 code typos

---
 notebooks/aperture_photometry/aperture_photometry.ipynb | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/notebooks/aperture_photometry/aperture_photometry.ipynb b/notebooks/aperture_photometry/aperture_photometry.ipynb
index 8ee6e22..04d2e7e 100644
--- a/notebooks/aperture_photometry/aperture_photometry.ipynb
+++ b/notebooks/aperture_photometry/aperture_photometry.ipynb
@@ -52,6 +52,7 @@
     "import asdf\n",
     "from astropy.io import fits\n",
     "from astropy.table import Table\n",
+    "import copy\n",
     "import matplotlib.pyplot as plt\n",
     "import numpy as np\n",
     "import photutils\n",
@@ -103,7 +104,7 @@
     }
    },
    "source": [
-    "We obtain data from S3 buckets by using `s3fs`. **NOTE THAT THIS PART NEEDS TO BE TESTED ON THE ACTUAL SCIENCE PLATFORM BEFORE MERGING.**"
+    "We obtain data from S3 buckets by using `s3fs`."
    ]
   },
   {
@@ -128,8 +129,8 @@
     "\n",
     "with fs.open(asdf_file_uri, 'rb') as f:\n",
     "    dm = rdm.open(f)\n",
-    "    asdf_file.data.value.copy()\n",
-    "    wcs = asdf_file.meta.wcs.copy()"
+    "    image = dm.data.value.copy()\n",
+    "    wcs = copy.deepcopy(dm.meta.wcs)"
    ]
   },
   {
@@ -149,7 +150,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "catalog_fname = asdf_dir_uri + 'ROMANISIM/CATALOGS_SCRIPTS/fullcat_101M_pared_ra0.50_dec0.50_WFI01.ecsv'\n",
+    "catalog_file_uri = asdf_dir_uri + 'ROMANISIM/CATALOGS_SCRIPTS/fullcat_101M_pared_ra0.50_dec0.50_WFI01.ecsv'\n",
     "with fs.open(catalog_file_uri) as catalog_file_stream:\n",
     "    cat = Table.read(catalog_fname)"
    ]