From 1ed7caf3326875c91d5e7fffc7526253827d0753 Mon Sep 17 00:00:00 2001 From: mdlpstsci Date: Wed, 10 May 2023 14:49:31 -0400 Subject: [PATCH] Newcandidate 360rc1 (#1557) * Fix a bug in buildFileListOrig causing crash when updatewcs=True (#1549) * Exception error now reported to include the name of the file being (#1552) processed (e.g., ERROR: Cannot run astrodrizzle on runastrodriz -m -i u482c701r_d0m.fits). * test against pre-built binaries of numpy (#1553) * Protect against using compute_sregion for no valid images (#1547) * Ensure the software does not execute compute_sregion() if no valid images are found for processing and AstroDrizzle is exiting. * Added a note to the buildEmptyDRZ to explain further the need for this empty (only header keywords, no data components) file. Fixed a typo, and changed the filename variable used when computing the sregion. * Added info to CHANGELOG. * Unit test for point kernel (#1542) * Added fixture for test_drizzle and point kernel test I've added a fixture to used for test_zero_input_weight and now a new test called test_point_kernel. I use the same pytest.mark.parameterize kernel parameters (for now). * Working tests using the Get_Grid Class and appropriate dny * Small text changes * Added csv truth files. * Added three additional tests for edge cases. * Added now with the changes made to the test. * Small comment/text change. * New test_setup.py file with Get_Grid Moved truth files to "truth_files" directory. test_drizzle.py is now test_kernel and I've added a new test_cdriz that uses the same test_setup.py. * Added test_cdriz tests. * improved test_zero_input_weight, no setup defaults * Added file creation on failure for non_sym. test * Added other tests + return_pngs cdriz tests * added warren's cdriz_setup, lanczos3 still fails. * Tests working * print statements and altered rtol * temprary new pytest added * added requirements.dev * steve's pytest removed * temporary assert command for test_point_kernel. * test_point_kernel w/ np.testing.assert_array_equal * test_kernel assert without mask * testing test_point_kernel with zero_background * better name for variable. * updated truth files with zero background * removing unused variable * path to saved files added+new truth when missing. * removed new_truth argument * large_sqaure to large_square * spelling corrections * removed duplicated line. * duplicated line removed.. * removed png path * Implemented cdriz_setup.get_output_fullpath * Added docstring to get_output_fullpath * WFPC2: Issue a specific error code and create an empty manifest file for bad data (#1550) * If analysis of a WFPC2 exposure determines the data cannot be processed for some reason, the converted WFPC2 FLT file is currently deleted. The process will now exist with the return code of NO_VIABLE_DATA (65), and an empty manifest file will be created. Also, fixed the option string, added a little documentation, and added a BaseException to handle the sys.exit(). * Updated the changelog. * Fix changelog (#1556) * Corrected the documentation for release candidates (RCs). The documenation for the separate RCs will be combined once the final is ready. * Fixed the Release Candidates(RCs) with dates into their own catagories. When the final release is ready, the separate RCs will be combined. --------- Co-authored-by: Mihai Cara Co-authored-by: Zach Burnett Co-authored-by: Steve Goldman <32876747+s-goldman@users.noreply.github.com> --- CHANGELOG.rst | 45 +++-- drizzlepac/processInput.py | 12 +- drizzlepac/runastrodriz.py | 31 +++- requirements-dev.txt | 1 + tests/drizzle/cdriz_setup.py | 157 ++++++++++++++++++ tests/drizzle/test_cdriz.py | 72 ++++++++ tests/drizzle/test_drizzle.py | 52 ------ tests/drizzle/test_kernel.py | 151 +++++++++++++++++ .../truth_files/edge_gaussian_truth.csv | 66 ++++++++ tests/drizzle/truth_files/gaussian_truth.csv | 66 ++++++++ tests/drizzle/truth_files/lanczos3_truth.csv | 66 ++++++++ .../large_square_gaussian_truth.csv | 66 ++++++++ .../nonsymmetrical_gaussian_truth.csv | 66 ++++++++ tests/drizzle/truth_files/point_truth.csv | 66 ++++++++ tests/drizzle/truth_files/square_truth.csv | 66 ++++++++ tests/drizzle/truth_files/turbo_truth.csv | 66 ++++++++ 16 files changed, 971 insertions(+), 78 deletions(-) create mode 100644 tests/drizzle/cdriz_setup.py create mode 100644 tests/drizzle/test_cdriz.py delete mode 100644 tests/drizzle/test_drizzle.py create mode 100644 tests/drizzle/test_kernel.py create mode 100644 tests/drizzle/truth_files/edge_gaussian_truth.csv create mode 100644 tests/drizzle/truth_files/gaussian_truth.csv create mode 100644 tests/drizzle/truth_files/lanczos3_truth.csv create mode 100644 tests/drizzle/truth_files/large_square_gaussian_truth.csv create mode 100644 tests/drizzle/truth_files/nonsymmetrical_gaussian_truth.csv create mode 100644 tests/drizzle/truth_files/point_truth.csv create mode 100644 tests/drizzle/truth_files/square_truth.csv create mode 100644 tests/drizzle/truth_files/turbo_truth.csv diff --git a/CHANGELOG.rst b/CHANGELOG.rst index 9dbfe6f36..6b0d4f7a4 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -17,40 +17,53 @@ number of the code change for that issue. These PRs can be viewed at: https://github.com/spacetelescope/drizzlepac/pulls -3.6.0 (28-Apr-2023) -=================== +3.6.0rc1 (10-May-2023) +====================== + +- For WFPC2 datasets which turn out to have no viable data to process and + a manifest file has been requested, force an empty manifest file to be + generated and issue the exit code NO_VIABLE_DATA (65). [#1550] + +- Protect against writing the S_REGION keyword in intentionally empty DRZ/DRC + files in ``processinput.process`` to avoid messy crash. [#1547] + +- Fix a bug in ``processinput.buildFileListOrig`` due to which astrodrizzle + might crash when ``updatewcs`` is set to ``True``. [#1549] -- Turn off use of ``verify_guiding()`` for WFPC2 images only as its use - incorrectly recognizes diffraction spikes from saturated stars as evidence +3.6.0rc0 (28-Apr-2023) +====================== + +- Turn off use of ``verify_guiding()`` for WFPC2 images only as its use + incorrectly recognizes diffraction spikes from saturated stars as evidence of loss of lock and flags those exposures as 'bad'. [#1511] - + - Ensure processing of all IMAGETYP=EXT WFPC2 targets. [#1505] - Properly identify neighbor Projection Cells which overlap input exposures. [#1503] -- Updates identify and remove any WFPC2 calibration exposures that - cannot be processed during standard pipeline alignment and drizzling. - The list of recognized calibration target names was updated to - accommodate WFPC2 and to identify exposures to be skipped and deleted +- Updates identify and remove any WFPC2 calibration exposures that + cannot be processed during standard pipeline alignment and drizzling. + The list of recognized calibration target names was updated to + accommodate WFPC2 and to identify exposures to be skipped and deleted after converting the D0M images into FLT images. [#1514] -- Compute a default kernel for use with astrometric_utils.extract_sources() - function when the kernel parameter is None. The default kernel is based on +- Compute a default kernel for use with astrometric_utils.extract_sources() + function when the kernel parameter is None. The default kernel is based on the fwhm parameter of the same function. [#1519] - Address many ReadTheDocs issues. [#1521 - #1529] -- Write the EXPNAME keyword to the ACS SVM and MVM headers to avoid errors +- Write the EXPNAME keyword to the ACS SVM and MVM headers to avoid errors and enforce consistency with WFC3. [#1530] - -- Properly populate the S_REGION keyword with a closed polygon for the + +- Properly populate the S_REGION keyword with a closed polygon for the pipeline FLT/FLC images. [#1533] - Compute the S_REGION values for pipeline drizzled products. [#1535] - Ensure the DATE keyword is written to the primary header of all output - drizzled products. The DATE represents the date the file was written. + drizzled products. The DATE represents the date the file was written. [#1537] - Update to ensure the SVM FLT/FLC files all contain the S_REGION keyword @@ -62,7 +75,7 @@ number of the code change for that issue. These PRs can be viewed at: - Turn on use of ``verify_guiding()`` to ignore exposures where guide star lock was lost and the stars are trailed. [#1443] -- Ensure when no sources are found and the variable thresh is zero, the +- Ensure when no sources are found and the variable thresh is zero, the ``verify_crthesh()`` properly indicates the catalog failed the CR threshold. [#1450] diff --git a/drizzlepac/processInput.py b/drizzlepac/processInput.py index 00ec54dff..e010b5bee 100644 --- a/drizzlepac/processInput.py +++ b/drizzlepac/processInput.py @@ -704,7 +704,9 @@ def buildFileListOrig(input, output=None, ivmlist=None, newfilelist, ivmlist = check_files.checkFiles(updated_input, ivmlist) if updatewcs: - uw.updatewcs(','.join(set(newfilelist) - set(filelist))) + new_flist = set(newfilelist) - set(filelist) + if new_flist: + uw.updatewcs(','.join(new_flist)) if len(ivmlist) > 0: ivmlist, filelist = list(zip(*ivmlist)) @@ -950,6 +952,11 @@ def buildEmptyDRZ(input, output): pipeline can handle the Multidrizzle zero expossure time exception where all data has been excluded from processing. + Notes + ----- + The existance of the DRZ file is also necessary to satisfy the interface + expectations of the archive. Do NOT delete this file. + Parameters ---------- input : str @@ -981,7 +988,7 @@ def buildEmptyDRZ(input, output): if '_drz' not in output: output = fileutil.buildNewRootname(output, extn='_drz.fits') - print('Building emtpy DRZ file with output name: %s' % output) + print('Building empty DRZ file with output name: %s' % output) # Open the first image (of the excludedFileList?) to use as a template to build # the DRZ file. @@ -1022,7 +1029,6 @@ def buildEmptyDRZ(input, output): fitsobj[0].header.add_history("** all input images were excluded from " "processing.**") - # Change the filename in the primary header to reflect the name of the output # filename. fitsobj[0].header['FILENAME'] = str(output) # +"_drz.fits" diff --git a/drizzlepac/runastrodriz.py b/drizzlepac/runastrodriz.py index 7eb0a4920..36629ea66 100755 --- a/drizzlepac/runastrodriz.py +++ b/drizzlepac/runastrodriz.py @@ -5,7 +5,7 @@ :License: :doc:`LICENSE` -USAGE: runastrodriz.py [-fhdaibng] inputFilename [newpath] +USAGE: runastrodriz.py [-bdahfginv] inputFilename [newpath] Alternative USAGE: python @@ -30,6 +30,9 @@ The '-g' option allows the user to TURN OFF alignment of the images to an external astrometric catalog, such as GAIA, as accessible through the MAST interface. +See the main() at the end of this module for all available options and a +terse description. + Additional control over whether or not to attempt to align to an external astrometric catalog, such as GAIA, is provided through the use of the environment variables: @@ -294,7 +297,16 @@ def process(inFile, force=False, newpath=None, num_cores=None, inmemory=True, # Remove FLT file created here, since the calibration file can NOT be aligned or drizzled os.remove(inFilename) print("ERROR: Inappropriate input file. Deleting converted WFPC2 FLT file.") - return + + # write out manifest file, if requested + mani_filename = inFile[:inFile.find('_d0m')] + '_manifest.txt' + if make_manifest: + if os.path.exists(mani_filename): + os.remove(mani_filename) + with open(mani_filename, 'w') as fout: + _ = [fout.write(f"{fname}\n") for fname in manifest_list] + print(f"Created manifest file: {mani_filename}") + sys.exit(analyze.Ret_code.NO_VIABLE_DATA.value) infile_det = fits.getval(inFilename, 'detector') cal_ext = None @@ -698,8 +710,10 @@ def process(inFile, force=False, newpath=None, num_cores=None, inmemory=True, drz_output = drz_product # keep track of output files manifest_list.append(drz_output) - # update s_region header keyword - processing_utils.compute_sregion(drz_product) + # update s_region header keyword only if the drz_output + # contains actual data, not just header information. + if asn_dicts is not None: + processing_utils.compute_sregion(drz_output) else: # Create default trailer file messages when astrodrizzle is not @@ -2131,6 +2145,7 @@ def main(): force = True if opt == "-i": inmemory = True + # The "-m" option is specific for WFPC2 data if opt == "-m": make_manifest = True if opt == "-v": @@ -2161,11 +2176,13 @@ def main(): except Exception as errorobj: print(str(errorobj)) - print("ERROR: Cannot run astrodrizzle on %s." % sys.argv[1]) + print("ERROR: Cannot run astrodrizzle on %s." % " ".join(sys.argv)) raise Exception(str(errorobj)) - sys.exit() - + # This except handles sys.exit() which raises the SystemExit exception which inherits from BaseException. + except BaseException: + exc_type, exc_value, exc_tb = sys.exc_info() + print(f"Return Value: {exc_value}") if __name__ == "__main__": main() diff --git a/requirements-dev.txt b/requirements-dev.txt index 931800a01..b4fb129da 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -3,3 +3,4 @@ git+https://github.com/spacetelescope/stsci.tools.git#egg=stsci.tools astropy>=0.0.dev0 git+https://github.com/spacetelescope/stwcs.git#egg=stwcs git+https://github.com/astropy/astroquery.git#egg=astroquery +numpy>=0.0.dev0 diff --git a/tests/drizzle/cdriz_setup.py b/tests/drizzle/cdriz_setup.py new file mode 100644 index 000000000..40d5ed8c1 --- /dev/null +++ b/tests/drizzle/cdriz_setup.py @@ -0,0 +1,157 @@ +import os +import numpy as np +from astropy import wcs +from drizzlepac import cdriz + + +def get_wcs(_grid, pscale=0.04): + w = wcs.WCS() + w.wcs.ctype = ["RA---TAN", "DEC--TAN"] + w.wcs.crpix = [_grid[0] / 2.0, _grid[1] / 2.0] # define as center pixel in array + w.wcs.crval = [10.000, 10.000] # RA/Decl. in decimal degrees + w.wcs.cdelt = [pscale / 3600.0, pscale / 3600.0] + w.wcs.set() + return w + + +class Get_Grid: + """Sets up inputs to call the python wrapper of the c code: cdriz.tdriz. + The size of the input and ouput grids can be specified in the arguments for + the init(). For an input grid of 4 x 4 and output grid of 5 x 5 you would + use the following call of the class. + + Get_Grid(inx=4,iny=4, outx=5, outy=5) + + mapping = cdriz.DefaultWCSMapping( + input_wcs, output_wcs, + input_wcs.pixel_shape[0], input_wcs.pixel_shape[1], + stepsize + ) + + """ + + def __init__(self, inx, iny, outx, outy): + np.random.seed(0) # keep same random across each instance + self.in_grid = (iny, inx) # use numpy indexing order (y,x) + self.out_grid = (outy, outx) # use numpy indexing order (y,x) + self.insci = np.random.randn(self.in_grid[0], self.in_grid[1]).astype("float32") + self.inwht = np.ones(self.in_grid, dtype=np.float32) + self.dny = self.insci.shape[1] # input y_grid + self.outsci = np.zeros(self.out_grid, dtype=np.float32) + self.outwht = np.zeros(self.out_grid, dtype=np.float32) + self.outctx = np.zeros(self.out_grid, dtype=np.int32) + self.w1 = get_wcs(self.in_grid) + self.w2 = get_wcs(self.out_grid) + self.mapping = cdriz.DefaultWCSMapping( + self.w1, self.w2, self.in_grid[0], self.in_grid[1], 1 + ) + + def zero_background(self): + super().__init__() + self.insci = np.zeros(self.in_grid, dtype=np.float32) + + +def cdriz_call(_set_kernel_pars, kernel): + """ + parameters explained in c code (arrdrizmodule.c) + + _vers, nmiss, nskip = cdriz.tdriz(insci, inwht, outsci, outwht, + outctx, uniqid, ystart, 1, 1, _dny, + pix_ratio, 1.0, 1.0, 'center', pixfrac, + kernel, in_units, expscale, wt_scl, + fillval, nmiss, nskip, 1, mapping) + + """ + cdriz.tdriz( + _set_kernel_pars.insci, + _set_kernel_pars.inwht, + _set_kernel_pars.outsci, + _set_kernel_pars.outwht, + _set_kernel_pars.outctx, + 1, # uniqid + 0, # ystart + 1, # xmin pixel to start reading; fits so starts at 1 + 1, # ymin pixel to start reading; fits so starts at 1 + _set_kernel_pars.dny, # _dny + 1.0, # pix_ratio + 1.0, # xscale; plate scale variations + 1.0, # yscale; plate scale variations + "corner", # center of pixel is what 0 corresponds to + 1.0, # pixfrac + kernel, # kernel + "cps", # units + 1.0, # expscale + 1.0, # wt_scale + "INDEF", # fillval + 0, # nmiss + 0, # nskip + 1, # vflag; historical value only (not used) + _set_kernel_pars.mapping, + ) + + +def get_output_fullpath(relative_path, output_filename): + """Returns the final output path given a name and relative path. + + Parameters + ---------- + relative_path : str + relative path from this file to desired path. + output_filename : str + desired name of output file (png or csv). + + Returns + ------- + output_fullpath: str + final output path + """ + local_path = os.path.dirname(__file__) + output_name = os.path.join(relative_path, output_filename) + output_fullpath = os.path.join(local_path, output_name) + print(f"Output Path: {output_fullpath}") + return output_fullpath + + +def save_array(_data, _name): + np.savetxt( + _name, + X=_data, + fmt="%1.8f", + delimiter=",", + ) + + +def generate_png(_set_kernel_pars, _name): + """Added function for displaying the test results as an image map. + This should show the expected point kernel response. + + Parameters + ---------- + _set_kernel_pars : Class instance + an instance of the kernel_pars class. + _name : str + The name of the output png file. + """ + # for generating truth files + import matplotlib.pyplot as plt + + fig = plt.figure(figsize=(4, 2)) + ax1 = fig.add_subplot(111, projection=_set_kernel_pars.w1) + ax1.imshow(_set_kernel_pars.outsci, origin="lower", cmap="Greys") + ax1.set_ylabel(" ") + ax1.set_xlabel(" ") + fig.savefig(_name) + + +def error_message(_data, _name): + """Saves new truth csv file on failure of test. + + Parameters + ---------- + _data : np.array + data to save to new truth file + _name : str + new name of truth file, should be slightly + different than current truth file + """ + save_array(_data, _name) diff --git a/tests/drizzle/test_cdriz.py b/tests/drizzle/test_cdriz.py new file mode 100644 index 000000000..4d3545c10 --- /dev/null +++ b/tests/drizzle/test_cdriz.py @@ -0,0 +1,72 @@ +import pytest +import os +import numpy as np +import cdriz_setup + + +@pytest.fixture +def kernel_pars(): + # get cdriz.triz inputs from cdriz_setup.py + _params = cdriz_setup.Get_Grid(inx=10, iny=10, outx=13, outy=13) + _params.zero_background() + return _params + + +# "square", "point", "turbo", "gaussian", "lanczos3" +@pytest.mark.parametrize("kernel", ["square", "point", "turbo"]) +def test_square_kernel(kernel_pars, kernel, return_png=True): + """Function tests different c code point kernels (inputs already created on instantiation). + + Parameters + ---------- + kernel_pars : Class + The Class inintialized in Get_Grid which includes all of the inputs need to run cdriz.tdriz. + kernel: str [argument passed with parameterize] + The name of the kernel being used. + return_png: + Whether to return a png of the outputs. + """ + + output_name = f"cdriz_{kernel}.png" + relative_path = "truth_files" + output_fullpath = cdriz_setup.get_output_fullpath(relative_path, output_name) + + # add bright pixel at center + kernel_pars.insci[3, 3] = 1e4 + + # resample: + cdriz_setup.cdriz_call(kernel_pars, kernel) + + if return_png: + # save truth file as figure + cdriz_setup.generate_png(kernel_pars, output_fullpath) + + assert np.allclose(np.sum(kernel_pars.outsci), 10000, 1e-7) + + +def test_gaussian_kernel(kernel_pars, return_png=True): + """Same as above test but with gaussian kernel.""" + + output_name = "cdriz_gaussian.png" + relative_path = "truth_files" + output_fullpath = cdriz_setup.get_output_fullpath(relative_path, output_name) + + kernel_pars.insci[3, 3] = 1e4 + cdriz_setup.cdriz_call(kernel_pars, "gaussian") + if return_png: + cdriz_setup.generate_png(kernel_pars, output_fullpath) + assert np.allclose(np.sum(kernel_pars.outsci), 10000, 1e-3) + + +def test_lanczos3_kernel(kernel_pars, return_png=True): + """Same as above test but with lanczos3 kernel.""" + + output_name = "cdriz_lanczos3.png" + relative_path = "truth_files" + output_fullpath = cdriz_setup.get_output_fullpath(relative_path, output_name) + + kernel_pars.insci[3, 3] = 1e4 + cdriz_setup.cdriz_call(kernel_pars, "lanczos3") + if return_png: + cdriz_setup.generate_png(kernel_pars, output_fullpath) + assert np.allclose(np.sum(kernel_pars.outsci), 9882.103, 1e-3) diff --git a/tests/drizzle/test_drizzle.py b/tests/drizzle/test_drizzle.py deleted file mode 100644 index c6c5daf8a..000000000 --- a/tests/drizzle/test_drizzle.py +++ /dev/null @@ -1,52 +0,0 @@ -import pytest - -import numpy as np -from astropy import wcs - -from drizzlepac import cdriz - -@pytest.mark.parametrize( - 'kernel', ['square', 'point', 'turbo', 'gaussian', 'lanczos3'] -) -def test_zero_input_weight(kernel): - """ - Test do_driz square kernel with grid - """ - # initialize input: - insci = np.ones((200, 400), dtype=np.float32) - inwht = np.ones((200, 400), dtype=np.float32) - inwht[:, 150:155] = 0 - - # initialize output: - outsci = np.zeros((210, 410), dtype=np.float32) - outwht = np.zeros((210, 410), dtype=np.float32) - outctx = np.zeros((210, 410), dtype=np.int32) - - # define coordinate mapping: - w1 = wcs.WCS() - w1.wcs.ctype = ['RA---CAR', 'DEC--CAR'] - w1.wcs.crpix = [201, 101] - w1.wcs.crval = [10, 10] - w1.wcs.cdelt = [1e-3, 1e-3] - w1.wcs.set() - - w2 = wcs.WCS() - w2.wcs.ctype = ['RA---CAR', 'DEC--CAR'] - w2.wcs.crpix = [206, 106] - w2.wcs.crval = [10, 10] - w2.wcs.cdelt = [1e-3, 1e-3] - w2.wcs.set() - - mapping = cdriz.DefaultWCSMapping(w1, w2, 400, 200, 1) - - # resample: - cdriz.tdriz( - insci, inwht, outsci, outwht, - outctx, 1, 0, 1, 1, 200, - 1.0, 1.0, 1.0, 'center', 1.0, - kernel, 'cps', 1.0, 1.0, - 'INDEF', 0, 0, 1, mapping - ) - - # check that no pixel with 0 weight has any counts: - assert np.allclose(np.sum(np.abs(outsci[(outwht == 0)])), 0) diff --git a/tests/drizzle/test_kernel.py b/tests/drizzle/test_kernel.py new file mode 100644 index 000000000..1771fe7e8 --- /dev/null +++ b/tests/drizzle/test_kernel.py @@ -0,0 +1,151 @@ +import os +import pytest +import numpy as np +from astropy import wcs +import cdriz_setup + + +@pytest.fixture +def kernel_pars(): + _params = cdriz_setup.Get_Grid(inx=50, iny=60, outx=51, outy=66) + _params.zero_background() + return _params + + +@pytest.mark.parametrize("kernel", ["square", "point", "turbo", "gaussian", "lanczos3"]) +def test_point_kernel(kernel, kernel_pars, return_png=True): + """Function tests different c code point kernels (inputs already created on instantiation). + + Parameters + ---------- + kernel : str + String associated with one of the c code point kernel options. + kernel_pars : Class + The Class inintialized in Get_Grid which includes all of the inputs need to run cdriz.tdriz. + return_png: bool, optional + Flag, whether to create an output image map (png). + """ + + # truth filename + output_name = f"{kernel}_truth" + relative_path = "truth_files" + output_fullpath = cdriz_setup.get_output_fullpath(relative_path, output_name) + + # add missing/flagged pixels in inwht + kernel_pars.insci[20:22, 21:22] = 100 + + # resample: + cdriz_setup.cdriz_call(kernel_pars, kernel) + + if return_png: + # save truth file as figure + cdriz_setup.generate_png(kernel_pars, f"{output_fullpath}.png") + + try: + truth_array = np.genfromtxt(f"{output_fullpath}.csv", delimiter=",") + except: + cdriz_setup.save_array(kernel_pars.outsci, f"{output_fullpath}.csv") + + assert np.allclose( + kernel_pars.outsci, + truth_array, + atol=1e-4, + rtol=1e-5, + ), cdriz_setup.error_message(kernel_pars.outsci, f"{output_fullpath}_new.csv") + + +def test_cdriz_edge(kernel_pars, kernel="gaussian", return_png=True): + """Similar to test_point_kernel but looking at bright pixels at edge of field.""" + + output_name = f"edge_{kernel}_truth" + relative_path = "truth_files" + output_fullpath = cdriz_setup.get_output_fullpath(relative_path, output_name) + + kernel_pars.insci[0, 21] = 100 + cdriz_setup.cdriz_call(kernel_pars, kernel) + + if return_png: + cdriz_setup.generate_png(kernel_pars, f"{output_fullpath}.png") + + try: + truth_array = np.genfromtxt(f"{output_fullpath}.csv", delimiter=",") + except: + cdriz_setup.save_array(kernel_pars.outsci, f"{output_fullpath}.csv") + assert np.allclose( + kernel_pars.outsci, truth_array, atol=1e-4 + ), cdriz_setup.error_message(kernel_pars.outsci, f"{output_fullpath}_new.csv") + + +def test_cdriz_large(kernel_pars, kernel="gaussian", return_png=True): + """Similar to test_point_kernel but looking at large pixel.""" + + output_name = f"large_square_{kernel}_truth" + relative_path = "truth_files" + output_fullpath = cdriz_setup.get_output_fullpath(relative_path, output_name) + + kernel_pars.insci[21:25, 22:26] = 100 + cdriz_setup.cdriz_call(kernel_pars, kernel) + + if return_png: + cdriz_setup.generate_png(kernel_pars, f"{output_fullpath}.png") + + try: + truth_array = np.genfromtxt(f"{output_fullpath}.csv", delimiter=",") + except: + cdriz_setup.save_array(kernel_pars.outsci, f"{output_fullpath}.csv") + assert np.allclose( + kernel_pars.outsci, truth_array, atol=1e-4 + ), cdriz_setup.error_message(kernel_pars.outsci, f"{output_fullpath}_new.csv") + + +def test_cdriz_non_symmetrical(kernel_pars, kernel="gaussian", return_png=True): + """Similar to test_point_kernel but looking at non-symmetrical pixel.""" + + output_name = f"nonsymmetrical_{kernel}_truth" + relative_path = "truth_files" + output_fullpath = cdriz_setup.get_output_fullpath(relative_path, output_name) + + kernel_pars.insci[21:25, 22:23] = 100 + cdriz_setup.cdriz_call(kernel_pars, kernel) + + if return_png: + cdriz_setup.generate_png(kernel_pars, f"{output_fullpath}.png") + + try: + truth_array = np.genfromtxt(f"{output_fullpath}.csv", delimiter=",") + except: + cdriz_setup.save_array(kernel_pars.outsci, f"{output_fullpath}.csv") + + assert np.allclose( + kernel_pars.outsci, truth_array, atol=1e-4 + ), cdriz_setup.error_message(kernel_pars.outsci, f"{output_fullpath}_new.csv") + + +@pytest.mark.parametrize("kernel", ["square", "point", "turbo", "gaussian", "lanczos3"]) +def test_zero_input_weight(kernel, kernel_pars): + """Tests that do_driz ignores bad pixels, or those that have an input weight (inwht) of 0. + + Parameters + ---------- + kernel : str + String associated with one of the c code point kernel options. + kernel_pars : Class + The Class initialized in Get_Class which includes all of the inputs need to run cdriz.tdriz. + """ + + # zero for all insci + kernel_pars.zero_background() + + # add bad bright pixels in insci + kernel_pars.insci[0:4, 0:4] = 1e8 + kernel_pars.inwht[0:4, 0:4] = 0 + + # adding two additinoal bright "sources" + kernel_pars.insci[6, 7] = 1000 + kernel_pars.insci[9, 6] = 1000 + + # resample + cdriz_setup.cdriz_call(kernel_pars, kernel) + + # check that any pixel with 0 weight has any counts: + assert np.sum(kernel_pars.outsci) < 1e5 diff --git a/tests/drizzle/truth_files/edge_gaussian_truth.csv b/tests/drizzle/truth_files/edge_gaussian_truth.csv new file mode 100644 index 000000000..2b3bde6fa --- 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