From 862518658593a8e51e15799109027c74620cc2ba Mon Sep 17 00:00:00 2001
From: "N. Tessa Pierce-Ward" <ntpierce@gmail.com>
Date: Tue, 30 Apr 2024 15:45:13 -0700
Subject: [PATCH] gh wfs

---
 .github/dependabot.yml           | 18 +++++++++
 .github/workflows/build-test.yml | 63 ++++++++++++++++++++++++++++++++
 2 files changed, 81 insertions(+)
 create mode 100644 .github/dependabot.yml
 create mode 100644 .github/workflows/build-test.yml

diff --git a/.github/dependabot.yml b/.github/dependabot.yml
new file mode 100644
index 0000000..8d8e23c
--- /dev/null
+++ b/.github/dependabot.yml
@@ -0,0 +1,18 @@
+version: 2
+updates:
+- package-ecosystem: pip
+  directory: "/"
+  schedule:
+    interval: weekly
+  open-pull-requests-limit: 10
+- package-ecosystem: cargo
+  directory: "/"
+  schedule:
+    interval: weekly
+  allow:
+    - dependency-type: "direct"
+  open-pull-requests-limit: 10
+- package-ecosystem: "github-actions"
+  directory: "/"
+  schedule:
+    interval: weekly
diff --git a/.github/workflows/build-test.yml b/.github/workflows/build-test.yml
new file mode 100644
index 0000000..fe713da
--- /dev/null
+++ b/.github/workflows/build-test.yml
@@ -0,0 +1,63 @@
+name: "maturin build"
+on:
+  pull_request:
+  push:
+    branches: [latest]
+jobs:
+  mamba:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+      with:
+        fetch-depth: 0
+
+    - name: Install latest stable rust
+      uses: actions-rs/toolchain@v1
+      with:
+         toolchain: stable
+         override: true
+         components: rustfmt, clippy
+
+    - name: Run cargo fmt
+      uses: actions-rs/cargo@v1
+      with:
+        command: fmt
+        args: --all -- --check
+
+    - name: cache rust
+      uses: Swatinem/rust-cache@v2
+
+    - name: cache conda
+      uses: actions/cache@v4
+      env:
+        CACHE_NUMBER: 0
+      with:
+        path: ~/conda_pkgs_dir
+        key:
+          ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }}
+
+    - name: setup conda
+      uses: conda-incubator/setup-miniconda@a4260408e20b96e80095f42ff7f1a15b27dd94ca
+      with:
+        auto-update-conda: true
+        python-version: 3.11
+        channels: conda-forge,bioconda
+        miniforge-variant: Mambaforge
+        miniforge-version: latest
+        use-mamba: true
+        mamba-version: "*"
+        activate-environment: sourmash_dev
+        auto-activate-base: false
+        use-only-tar-bz2: true
+
+    - name: install dependencies
+      shell: bash -l {0}
+      run: mamba install git compilers maturin pytest
+
+    - name: build
+      shell: bash -l {0}
+      run: make
+
+    - name: test
+      shell: bash -l {0}
+      run: pytest