diff --git a/src/python/tests/test_manysearch.py b/src/python/tests/test_manysearch.py index ed9dccd3..c51228cc 100644 --- a/src/python/tests/test_manysearch.py +++ b/src/python/tests/test_manysearch.py @@ -1432,13 +1432,13 @@ def test_bug_550(runtmp): # due to a problem with the way Signature::name() behaved in sourmash # before r0.18.0. # see https://github.com/sourmash-bio/sourmash_plugin_branchwater/issues/550 - fa_file = get_test_data('short.fa') - sig_out = runtmp.output('short.sig') - mf_out = runtmp.output('short.mf.csv') - csv_out = runtmp.output('out.csv') - - runtmp.sourmash('sketch', 'dna', fa_file, '-o', sig_out) - runtmp.sourmash('sig', 'collect', '-F', 'csv', sig_out, '-o', mf_out) - runtmp.sourmash('scripts', 'manysearch', mf_out, mf_out, '-o', csv_out) + fa_file = get_test_data("short.fa") + sig_out = runtmp.output("short.sig") + mf_out = runtmp.output("short.mf.csv") + csv_out = runtmp.output("out.csv") + + runtmp.sourmash("sketch", "dna", fa_file, "-o", sig_out) + runtmp.sourmash("sig", "collect", "-F", "csv", sig_out, "-o", mf_out) + runtmp.sourmash("scripts", "manysearch", mf_out, mf_out, "-o", csv_out) assert os.path.exists(csv_out)