document and test skipmer moltypes #3449
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bluegenes
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This was referenced Dec 20, 2024
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This PR updates the FFI and python layer to allow the skipmer moltypes (`skipm1n3`, `skipm2n3`). We will keep this as an undocumented experimental feature for now. There are no guarantees at the moment that skipmers will work with all sourmash commands, as there are no explicit tests in place. There *are* tests for using skipmers with branchwater, so all skipmer searching is best done in the plugin for now. This PR enables critical handy utilities, though: `sig cat`, `sig summarize`, `sig describe`, etc. Documentation and additional tests should be added prior to release(#3449). --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: C. Titus Brown <[email protected]>
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Skipmers are being added to both the rust layer (#3395) and python layer (#3446). These will remain undocumented for now as they are for testing + experimentation.
Add documentation + skipmer tests prior to release.
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