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I wonder if you guys had plans to add annotation to the transcriptome? #2

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Buuntu opened this issue May 2, 2019 · 1 comment
Open

I wonder if you guys had plans to add annotation to the transcriptome? #2

Buuntu opened this issue May 2, 2019 · 1 comment

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@Buuntu
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Buuntu commented May 2, 2019

Do you guys have any plans to add an annotation pipeline to the transcriptome (like through Trinotate). I am struggling with that portion of the analysis and really like the snakemake workflows you guys make, they are very helpful in developing my own pipelines (working on a Trinity->Kallisto->Trinotate->Deseq2 pipeline with Snakemake).
@johanneskoester
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Thanks a lot for the suggestion! So, there are currently no concrete plans but it is definitely a good idea. We would be happy to see any contributions in this direction. I am keeping this open as a reminder for anybody interested.

tedil added a commit to tedil/rna-seq-kallisto-sleuth that referenced this issue Sep 17, 2021
@tedil
column order snakemake-workflows#2
7e4eb45
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@johanneskoester @Buuntu