From 9b193dce30fdf7fad7e2020639d9980a6aa71a82 Mon Sep 17 00:00:00 2001 From: Felix Wiegand Date: Wed, 17 Jul 2024 12:23:59 +0200 Subject: [PATCH] docs: Fix units configuration docs for bam files (#104) Just a quick PR to update the docs for the recent changes from #94. --- config/README.md | 2 ++ 1 file changed, 2 insertions(+) diff --git a/config/README.md b/config/README.md index ab271bb3..50067a2d 100644 --- a/config/README.md +++ b/config/README.md @@ -21,6 +21,8 @@ For each unit, provide either of the following: * The path to two pairead-end FASTQ files in the columns `fq1`, `fq2`. * The path to a single-end FASTQ file in the column `fq1`. For single-end data, you also need to specify `fragment_len_mean` and `fragment_len_sd`, which should usually be available from your sequencing provider. +* The path to a single-end BAM file in the column `bam_single` +* The path to a paired-end bam BAM file in the column `bam_paired` Missing values can be specified by empty columns or by writing `NA`.