diff --git a/workflow/rules/meta_comparisons.smk b/workflow/rules/meta_comparisons.smk index 999b1211..a17d7fc9 100644 --- a/workflow/rules/meta_comparisons.smk +++ b/workflow/rules/meta_comparisons.smk @@ -3,7 +3,7 @@ rule meta_compare_diffexp: expand( "results/sleuth/diffexp/{model}.genes-representative.diffexp.rds", model=lookup( - dpath="meta_comparisons/comparisons/{meta_comp}/items/*/*", + dpath="meta_comparisons/comparisons/{meta_comp}/items/*", within=config, ), ), @@ -14,7 +14,7 @@ rule meta_compare_diffexp: notebook="logs/meta_compare_diffexp/{meta_comp}.ipynb", params: labels=lookup( - dpath="meta_comparisons/comparisons/{meta_comp}/items/*", + dpath="meta_comparisons/comparisons/{meta_comp}/items", within=config, ), conda: @@ -28,7 +28,7 @@ rule meta_compare_enrichment: expand( "results/tables/go_terms/{model}.go_term_enrichment.gene_fdr_{gene_fdr}.go_term_sig_study_fdr_{go_term_fdr}.tsv", model=lookup( - dpath="meta_comparisons/comparisons/{meta_comp}/items/*/*", + dpath="meta_comparisons/comparisons/{meta_comp}/items/*", within=config, ), gene_fdr=str(config["enrichment"]["goatools"]["fdr_genes"]).replace( @@ -45,7 +45,7 @@ rule meta_compare_enrichment: notebook="logs/meta_compare_enrichment/{meta_comp}.ipynb", params: labels=lookup( - dpath="meta_comparisons/comparisons/{meta_comp}/items/*", + dpath="meta_comparisons/comparisons/{meta_comp}/items", within=config, ), conda: @@ -59,7 +59,7 @@ rule meta_compare_pathways: expand( "results/tables/pathways/{model}.pathways.tsv", model=lookup( - dpath="meta_comparisons/comparisons/{meta_comp}/items/*/*", + dpath="meta_comparisons/comparisons/{meta_comp}/items/*", within=config, ), ), @@ -70,7 +70,7 @@ rule meta_compare_pathways: notebook="logs/meta_compare_pathways/{meta_comp}.ipynb", params: labels=lookup( - dpath="meta_comparisons/comparisons/{meta_comp}/items/*", + dpath="meta_comparisons/comparisons/{meta_comp}/items", within=config, ), conda: