From 245366c0ce55c2bdaff4a4d0cedff4ab56388b4b Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Felix=20M=C3=B6lder?= Date: Mon, 17 Apr 2023 10:10:42 +0200 Subject: [PATCH] fix: fix vembrane aux (#223) --- workflow/rules/common.smk | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk index bcf62f0f5..114f7a178 100644 --- a/workflow/rules/common.smk +++ b/workflow/rules/common.smk @@ -685,7 +685,7 @@ def get_annotation_filter_expression(wildcards): def get_annotation_filter_aux(wildcards): return [ - f"--aux {name} {path}" + f"--aux {name}={path}" for filter in get_annotation_filter_names(wildcards) for name, path in get_filter_aux_entries(filter).items() ] @@ -720,7 +720,7 @@ def get_candidate_filter_aux(): return "" else: return [ - f"--aux {name} {path}" + f"--aux {name}={path}" for name, path in get_filter_aux_entries("candidates").items() ]