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Describe the bug
A clear and concise description of what the bug is.
the program fails to compile
To Reproduce
Give exact command you ran. When you run ASTRAL, make sure you keep the standard error (e.g., by adding 2>astral.log to the end of your command).
Log file
Send us the log file (standard error of ASTRAL)
++ grep _versinon main/phylonet/coalescent/CommandLine.java
++ grep String
++ sed -e 's/.*= .//g' -e 's/.;//g'
+ version=5.7.8
+ echo Version 5.7.8
Version 5.7.8
+ cd main
+ rm -f 'phylonet/coalescent/*.class' phylonet/util/BitSet.class 'phylonet/tree/model/sti/STITreeCluster*.class' phylonet/tree/io/NewickWriter.class
+ javac -source 1.6 -target 1.6 -classpath ../lib/main.jar:../lib/colt.jar:../lib/JSAP-2.1.jar phylonet/util/BitSet.java phylonet/coalescent/AbstractClusterCollection.java phylonet/coalescent/AbstractComputeMinCostTask.java phylonet/coalescent/AbstractDataCollection.java phylonet/coalescent/AbstractInference.java phylonet/coalescent/AbstractPartition.java phylonet/coalescent/AbstractWeightCalculator.java phylonet/coalescent/BipartitionWeightCalculator.java phylonet/coalescent/CannotResolveException.java phylonet/coalescent/CommandLine.java phylonet/coalescent/DeepCoalescencesCounter.java phylonet/coalescent/DLClusterCollection.java phylonet/coalescent/DLComputeMinCostTask.java phylonet/coalescent/DLDataCollection.java phylonet/coalescent/DLInference.java phylonet/coalescent/DLWeightCalculator.java phylonet/coalescent/GlobalMaps.java phylonet/coalescent/IClusterCollection.java phylonet/coalescent/Options.java phylonet/coalescent/Polytomy.java phylonet/coalescent/Polytree.java phylonet/coalescent/Posterior.java phylonet/coalescent/QuartetCollection.java phylonet/coalescent/SimilarityMatrix.java phylonet/coalescent/SingleIndividualSample.java phylonet/coalescent/Solution.java phylonet/coalescent/SpeciesMapper.java phylonet/coalescent/STBipartition.java phylonet/coalescent/TaxonIdentifier.java phylonet/coalescent/TaxonNameMap.java phylonet/coalescent/Tripartition.java phylonet/coalescent/Utils.java phylonet/coalescent/WQClusterCollection.java phylonet/coalescent/WQComputeMinCostTask.java phylonet/coalescent/WQDataCollection.java phylonet/coalescent/WQInference.java phylonet/coalescent/WQWeightCalculator.java phylonet/tree/model/sti/STITreeCluster.java phylonet/tree/io/NewickWriter.java
warning: [options] bootstrap class path not set in conjunction with -source 6
error: Source option 6 is no longer supported. Use 7 or later.
error: Target option 6 is no longer supported. Use 7 or later.
** Version
Additional context
Add any other context about the problem here.
The text was updated successfully, but these errors were encountered:
jaum20
changed the title
error: Source option 6 is no longer supported. Use 7 or later.
compilation error: Source option 6 is no longer supported. Use 7 or later.
Oct 13, 2022
Hi @jaum20 If you are on a Mac, I found online that you can install astral with homebrew. After installing homebrew (https://brew.sh) , open a terminal and run
brew install brewsci/bio/astral
It needs to be a recent OS, however. It installed on my machine running Ventura, but not Mojave
Describe the bug
A clear and concise description of what the bug is.
the program fails to compile
To Reproduce
Give exact command you ran. When you run ASTRAL, make sure you keep the standard error (e.g., by adding
2>astral.log
to the end of your command).git clone https://github.com/smirarab/ASTRAL
cd ASTRAL
./make.sh
Log file
Send us the log file (standard error of ASTRAL)
** Version
Additional context
Add any other context about the problem here.
The text was updated successfully, but these errors were encountered: