diff --git a/workflows/phoenix.nf b/workflows/phoenix.nf
index 0153ab07..6d93ec9a 100644
--- a/workflows/phoenix.nf
+++ b/workflows/phoenix.nf
@@ -291,10 +291,10 @@ workflow PHOENIX_EXTERNAL {
         )
         ch_versions = ch_versions.mix(DETERMINE_TOP_MASH_HITS.out.versions)
 
-        // // Combining filtered scaffolds with the top taxa list based on meta.id
-        // top_taxa_list_ch = BBMAP_REFORMAT.out.filtered_scaffolds.map{meta, filtered_scaffolds -> [[id:meta.id], filtered_scaffolds]}\
-        // .join(DETERMINE_TOP_MASH_HITS.out.top_taxa_list.map{              meta, top_taxa_list      -> [[id:meta.id], top_taxa_list ]}, by: [0])\
-        // .join(DETERMINE_TOP_MASH_HITS.out.reference_dir.map{              meta, reference_dir      -> [[id:meta.id], reference_dir ]}, by: [0])
+        // Combining filtered scaffolds with the top taxa list based on meta.id
+        top_taxa_list_ch = BBMAP_REFORMAT.out.filtered_scaffolds.map{meta, filtered_scaffolds -> [[id:meta.id], filtered_scaffolds]}\
+        .join(DETERMINE_TOP_MASH_HITS.out.top_taxa_list.map{              meta, top_taxa_list      -> [[id:meta.id], top_taxa_list ]}, by: [0])\
+        .join(DETERMINE_TOP_MASH_HITS.out.reference_dir.map{              meta, reference_dir      -> [[id:meta.id], reference_dir ]}, by: [0])
 
         // // Getting species ID
         // FASTANI (