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test.yml
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name: shpc test modules
on:
pull_request: []
jobs:
test:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
module: [[lmod, 8.4.27], [tcl, 4.7.1], [tcl, 5.0.1]]
container_tech: [podman, singularity, docker]
steps:
- name: Install Dependencies
run: |
sudo apt-get install lua5.2 liblua5.2-dev lua-filesystem lua-posix tcl tcl-dev tcsh
- name: Install Environment Modules
if: ${{ matrix.module[0] == 'tcl' }}
env:
PKG_VERSION: ${{ matrix.module[1] }}
run: |
curl -LJO https://github.com/cea-hpc/modules/releases/download/v${PKG_VERSION}/modules-${PKG_VERSION}.tar.gz
tar xfz modules-${PKG_VERSION}.tar.gz
ls
cd modules-${PKG_VERSION}
./configure
make
sudo make install
- name: Install Lmod
if: ${{ matrix.module[0] == 'lmod' }}
env:
PKG_VERSION: ${{ matrix.module[1] }}
run: |
PKG_URL="https://github.com/TACC/Lmod/archive/${PKG_VERSION}.tar.gz"
wget $PKG_URL
tar xfz ${PKG_VERSION}.tar.gz
cd Lmod-${PKG_VERSION}
./configure --prefix=/usr/share && make && make install
- uses: eWaterCycle/setup-singularity@v7
if: ${{ matrix.container_tech == 'singularity' }}
name: Install Singularity
with:
singularity-version: 3.7.1
- name: Create conda environment
run: conda create --quiet -c conda-forge --name shpc spython
- uses: actions/checkout@v3
- name: Install shpc
run: |
export PATH="/usr/share/miniconda/bin:$PATH"
source activate shpc
pip install -e .
- name: Run python module tests (bash)
shell: bash
env:
module_sys: ${{ matrix.module[0] }}
container_tech: ${{ matrix.container_tech }}
run: |
case "${module_sys}" in
lmod)
. /usr/share/lmod/lmod/init/bash
;;
tcl)
. /usr/local/Modules/init/bash
shopt expand_aliases || true
shopt -s expand_aliases
;;
esac
export PATH="/usr/share/miniconda/bin:$PATH"
source activate shpc
shpc config set container_tech:${{ matrix.container_tech }}
shpc config set module_sys:${module_sys}
shpc config set enable_tty:false
printf "\n\shpc test ============================================\n"
shpc test python:3.9.5-alpine
shpc install python:3.9.5-alpine
module use ./modules
module load python/3.9.5-alpine
alias
printf "\n\nmodule show ============================================\n"
module show python/3.9.5-alpine
printf "\n\nmodule whatis ==========================================\n"
module whatis python/3.9.5-alpine
printf "\n\nmodule help ============================================\n"
module help python/3.9.5-alpine
set -x
python-exec echo donuts >test_output
cat test_output
grep --quiet donuts test_output
python-container > container_output
cat container_output
python-run python --version >test_output
cat test_output
grep --quiet 'Python 3.9.5' test_output
rm test_output
mkdir -p tmp-modules
shpc config set views_base:tmp-modules
shpc view create noodles
shpc view install noodles python:3.9.5-alpine
shpc uninstall --force python:3.9.5-alpine
shpc view --force delete noodles
- name: Run python module tests (tcsh)
shell: tcsh -e {0}
env:
module_sys: ${{ matrix.module[0] }}
container_tech: ${{ matrix.container_tech }}
run: |
switch ("${module_sys}")
case lmod:
source /usr/share/lmod/lmod/init/tcsh
breaksw
case tcl:
source /usr/local/Modules/init/tcsh
breaksw
endsw
source /usr/share/miniconda/etc/profile.d/conda.csh
conda activate shpc
shpc config set container_tech:${{ matrix.container_tech }}
shpc config set module_sys:${module_sys}
shpc config set enable_tty:false
shpc install python:3.9.5-alpine
module use ./modules
module load python/3.9.5-alpine
alias
printf "\n\nmodule show ============================================\n"
module show python/3.9.5-alpine
printf "\n\nmodule whatis ==========================================\n"
module whatis python/3.9.5-alpine
printf "\n\nmodule help ============================================\n"
module help python/3.9.5-alpine
python-container > container_output
cat container_output
python-exec echo donuts >test_output
cat test_output
grep --quiet donuts test_output
python-run python --version >test_output
cat test_output
grep --quiet 'Python 3.9.5' test_output
rm test_output
mkdir -p tmp-modules
shpc config set views_base:tmp-modules
shpc view create noodles
shpc view install noodles python:3.9.5-alpine
shpc uninstall --force python:3.9.5-alpine
shpc view --force delete noodles