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bioconda installation do not work #4

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gucedac opened this issue Apr 12, 2022 · 2 comments
Open

bioconda installation do not work #4

gucedac opened this issue Apr 12, 2022 · 2 comments

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@gucedac
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gucedac commented Apr 12, 2022

Hi.
I am trying to install inovirus_detector using bioconda by I just got this ...
`
$conda create -n inovirus_detector -c bioconda perl-bioperl=1.7.2 blast=2.7.1 hmmer=3.2.1

Collecting package metadata (current_repodata.json): done
Solving environment: failed with repodata from current_repodata.json, will retry with next repodata source.
Collecting package metadata (repodata.json): done
Solving environment:/
`
I waited for a long time to Solving environment: but nothing happens

Someone can help me?

@simroux
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simroux commented Apr 12, 2022

Unfortunately, this is a (common) conda issue, and nothing specific to this tool. There are some suggestions online, e.g. https://stackoverflow.com/questions/63734508/stuck-at-solving-environment-on-anaconda , but no universal fix (that I know of).

One possible solution may be to use mamba instead of conda, but this has not been tested for Inovirus detector.

@gucedac
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gucedac commented Apr 15, 2022

Unfortunately, this is a (common) conda issue, and nothing specific to this tool. There are some suggestions online, e.g. https://stackoverflow.com/questions/63734508/stuck-at-solving-environment-on-anaconda , but no universal fix (that I know of).

One possible solution may be to use mamba instead of conda, but this has not been tested for Inovirus detector.

I used mamba and worked it!! Thanks

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