diff --git a/DESCRIPTION b/DESCRIPTION index 2671519..c341305 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -2,7 +2,7 @@ Package: pharmOncoX Type: Package Title: Molecularly targeted cancer drugs and biomarkers Version: 1.4.8 -Date: 2023-11-30 +Date: 2023-12-12 Authors@R: c(person(given = "Sigve", family = "Nakken", diff --git a/NEWS.md b/NEWS.md index 859bef0..55b5dbe 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,8 @@ +# Version 1.4.8 (December 12th 2023) + +* Updated NCI Thesaurus - 23.11d +* Updated CIViC data (20231212) + # Version 1.4.8 (November 30th 2023) * Updated OTP (v2023.12) diff --git a/R/sysdata.rda b/R/sysdata.rda index 3054233..05f102c 100644 Binary files a/R/sysdata.rda and b/R/sysdata.rda differ diff --git a/data-raw/custom_drug_target_regex_nci.tsv b/data-raw/custom_drug_target_regex_nci.tsv index 8a1b5fa..7be355e 100755 --- a/data-raw/custom_drug_target_regex_nci.tsv +++ b/data-raw/custom_drug_target_regex_nci.tsv @@ -10,8 +10,18 @@ Garsorasib KRAS Anti-BTLA BTLA Cifurtilimab CD40 MRTX1133 KRAS +Fexagratinib FGFR1 +Fexagratinib FGFR2 +Fexagratinib FGFR3 +Fexagratinib FGFR4 +Firmonertinib EGFR +HIF-2alpha Inhibitor EPAS1 +HMGB1 Inhibitor HMGB1 Izalontamab HER1 Izalontamab ERBB3 +DGK-alpha Inhibitor DGKH +DGKalpha Inhibitor DGKH +DNA Polymerase Theta Inhibitor POLQ ALDH1/3 Inhibitor ABD-3001 ALDH1 ALDH1/3 Inhibitor ABD-3001 ALDH3 Anti-Claudin-18.2|Anti-CLDN18.2 Monoclonal CLDN18 diff --git a/data-raw/data-raw.R b/data-raw/data-raw.R index 307061d..afc18ef 100755 --- a/data-raw/data-raw.R +++ b/data-raw/data-raw.R @@ -74,7 +74,7 @@ drug_sets <- list() ## Get all anticancer drugs, NCI thesaurus + DGIdb drug_sets[['nci']] <- get_nci_drugs( nci_db_release = nci_db_release, - overwrite = F, + overwrite = T, path_data_raw = path_data_raw, path_data_processed = path_data_tmp_processed) diff --git a/data-raw/metadata_pharm_oncox.xlsx b/data-raw/metadata_pharm_oncox.xlsx index 42563bc..f7b22ef 100644 Binary files a/data-raw/metadata_pharm_oncox.xlsx and b/data-raw/metadata_pharm_oncox.xlsx differ