From dac568065668faf73c259dcc195100632a83134f Mon Sep 17 00:00:00 2001 From: Sigve Nakken Date: Sun, 7 Jul 2024 23:01:04 +0200 Subject: [PATCH] update README and news --- README.md | 4 ++++ pkgdown/index.md | 4 ++++ vignettes/CHANGELOG.Rmd | 5 +++++ 3 files changed, 13 insertions(+) diff --git a/README.md b/README.md index 8ff2918..1dcfdfb 100755 --- a/README.md +++ b/README.md @@ -12,6 +12,10 @@ Snapshots of sections in the [quarto](https://quarto.org)-based cancer predispos ## News +- *July 2024*: **2.0.1 release** + - patch with bug fix for mitochondrial input variants ([pr245](https://github.com/sigven/pcgr/pull/245)) + - [CHANGELOG](https://sigven.github.io/cpsr/articles/CHANGELOG.html) + - *June 2024*: **2.0.0 release** - New HTML report generation and layout with [quarto](https://quarto.org/) - Excel output supported diff --git a/pkgdown/index.md b/pkgdown/index.md index 508dbcc..014842e 100755 --- a/pkgdown/index.md +++ b/pkgdown/index.md @@ -24,6 +24,10 @@ Snapshots of sections in the [quarto](https://quarto.org)-based cancer predispos ### News +* *July 2024*: **2.0.1 release** + - patch with bug fix for mitochondrial input variants ([pr245](https://github.com/sigven/pcgr/pull/245)) + - [CHANGELOG](https://sigven.github.io/cpsr/articles/CHANGELOG.html) + * *June 2024*: **2.0.0 release** - New HTML report generation and layout with [quarto](https://quarto.org/) - Excel output supported diff --git a/vignettes/CHANGELOG.Rmd b/vignettes/CHANGELOG.Rmd index 22af3ea..9489112 100644 --- a/vignettes/CHANGELOG.Rmd +++ b/vignettes/CHANGELOG.Rmd @@ -3,6 +3,11 @@ title: "Changelog" output: rmarkdown::html_document --- +## v2.0.1 + +- Date: **2024-07-07** +- Fixed bug for chrM variants in input - not properly annotated by VEP, and not correctly processed in `pcgrr`. Any mitochondrial variants found in input VCF are now removed during VCF pre-processing. + ## v2.0.0 * Date: **2024-06-26**