Package design to perform and benchmark spatial RNA velocity models using nuclear-export models.
This repository includes the following folders of interest:
- STVelo: includes all the functions and classes implemented for performing RNA insitu velocity and complementary analysis
- notebooks: contains notebooks exemplifying the use of in situ RNA velocity.
Please first clone the environment by running in the terminal:
git clone https://github.com/sergiomarco25/STVelo.git
Navigate to the folder:
cd STVelo
create a conda environment :
conda env create --name stvelo
Acivate the conda environment by:
conda activate stvelo
And install using pip:
pip install -e .