2.1.19

v2.1.19

Update README.md

HaploGrep v2.1.18

• Add heteroplasmies with level over 90 % to haplogroup profile. This is done by specifying a AS Tag in heterozygous calls. Please use https://github.com/seppinho/mutation-server to generate a VCF with heteroplasmies.
• Add new feature to export n best hits including a new export format

HaploGrep v2.1.17

• Improved output text file
• Update VCFReader

HaploGrep v2.1.16

• Create graphical tree

HaploGrep v2.1.15

Enable fasta support based on bwa 0.7.17

HaploGrep v2.1.14

fixed issues:
#11 (space in extend-report)
#10 (error in lineage)
#9 (* as deletions) Attention - alignment may not be correct - HaploGrep does not realign the indels

Removed additional tab between range and Haplogroup

HaploGrep v2.1.13

• Support diploid VCF

HaploGrep v2.1.12

• Fix Annotation Path

HaploGrep v2.1.11

• Update Quality Score Calculation

HaploGrep v2.1.10

• Integrated RSRS Beta Support!