Fail to install SAM2 small

[aroskoth]

Hello everyone,

I wanted to install the SAM2 Small on my work laptop. For some reason it fails with the error:

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java.lang.RuntimeException: Error executing the following command: [cmd.exe, /c, C:\Users\myUserName\fiji-win64\Fiji.app\appose_x86_64\envs\sam2\python.exe, -m, pip, install, mkl==2024.0.0, samv2==0.0.4, pytest]
at io.bioimage.modelrunner.apposed.appose.Mamba.runPythonIn(Mamba.java:1057)
at ai.nets.samj.install.Sam2EnvManager.installSAMDeps(Sam2EnvManager.java:336)
at ai.nets.samj.install.Sam2EnvManager.installSAMDeps(Sam2EnvManager.java:296)
at ai.nets.samj.install.Sam2EnvManager.installEverything(Sam2EnvManager.java:364)
at ai.nets.samj.gui.SAMModelPanel.lambda$createInstallationThread$7(SAMModelPanel.java:280)
at java.lang.Thread.run(Thread.java:750)

I then installed it on my private laptop and there it seems to work. Can anyone tell me what the issue is and how I could correct it?

Thank you very much in advance!

[carlosuc3m]

are you using the latest available version of samj? Is that the whole error?
Regards,
Carlos

[aroskoth]

Hey Carlos,

Thank you for your answer.
Yes. I downloaded the latest SAMJ version through the update manager of Fiji. I also just tried uninstalling and installing it again but it is still the same error.
Could I try to manually install the model somehow, or are there any dependencies that I could reinstall?

Best,
Aurelius

[aroskoth]

Hey Carlos,

I just tried installing other models and the EfficientViTSAM-I2 and EfficientViTSAM-xI0 both can be installed but give the error that the image is not a 2D image, which it in fact is.
I guess this is some issue due to my computer being regulated by my organisation, since my private one does not give those errors. I will just be doing my analysis on my private laptop with SAMJ then.

Thank you for your suggestions.

Best,
Aurelius

[carlosuc3m]

HEllo @aroskoth ,
SAMJ indeed executes some commands by itself.
I will tell you the commands that are executed by SAMJ to see if you can install it by yourself.
Also I will soon update the version to one that gives more verbose errors so we can understand what is happening.
Sorry for the errors and thanks for trying!