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install failure for conda Installation #16
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I've seen that happen for people running on ARM-based Macs. Conda doesn't have ARM compiled versions of some binary dependencies. Luckily those Macs can execute x86 code, you just have to tell them to look in those repositories. I don't have a Mac to test on, but you could try: |
Thank you, I have already solved the install problem. But i got another question, is the environment for https://github.com/seanrjohnson/protein_gibbs_sampler/tree/v0.1.0 same as https://github.com/seanrjohnson/protein_gibbs_sampler?In another word, can i just use the environment "protein_gibbs_sampler" in newest version installed by conda for "v0.1.0" too? Because I want use the /training/mlm-finetuner-esmt12/finetune.py for finetune a model, but i can only find in the version0.1.0. But I can't install docker, I can't use the installation guide for version0.1.0 |
That's a good question. I'm not sure. I don't think you need docker though. Those training scripts might work if you just install the newest release and then add a few more dependencies manually, like tensorboard? Those training scripts were all written and used by @kennymassie, personally I never used them, so I don't know how they work. Maybe he can help? |
I am trying to install the environment on Windows following the Conda Installation instructions. When I run the command:
conda env create --name protein_gibbs_sampler -f conda_env.yml
I encounter errors preventing the installation of the following packages:
muscle
hmmer
mafft
I also tried to install them separately using:
conda install -c bioconda mafft hmmer muscle
But I faced the same issue. Could you please advise on how to resolve this?
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