setup.py

from glob import glob
from os.path import basename, splitext
from setuptools import setup, find_packages
# from distutils.core import setup, find_packages

setup(
    name="pgen",
    version="0.2.3",
    description="Generating new protein sequence by gibbs sampling masked protein language models",
    author="Sean Johnson, Sarah Monaco, Kenneth Massie, Zaid Sayed",
    url="https://github.com/seanrjohnson/protein_gibbs_sampler",
    license="MIT",
    packages=find_packages('src'),
    package_dir={'': 'src'},
    scripts=[
        "src/pgen/pgen_esm.py", 
        "src/pgen/pgen_esm_from_fasta.py",
        "src/pgen/pgen_msa.py", 
        "src/pgen/pgen_msa_revised.py", 
        "src/pgen/likelihood_esm.py", 
        "src/pgen/likelihood_esm_msa.py" , 
        "src/pgen/clean_fasta.py"
    ],
    # py_modules=[splitext(basename(path))[0] for path in glob('src/pgen/*.py')],
    install_requires=['pytest', 'tqdm', 'pytest-datadir', 'biopython~=1.79'],
    include_package_data=True,
    zip_safe=False,
    # python_requires='>=3.6'
)