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3Di_background_frequencies.txt
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3Di_background_frequencies.txt
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#Pfam35 AF2 structures
# June 4, 2023
#ACDEFGHIKLMNPQRSTVWY
0.03250097755144809 0.036683284080767264 0.1314300779672406 0.014696362511243635 0.023794930112275337 0.02669045949540303 0.027815793340719357 0.02152706720757651 0.020186369774869012 0.09414313837214579 0.009006234476526521 0.03099326777965728 0.08287422778257789 0.052192720289686904 0.03288446493327775 0.08897073094643847 0.017958989720249393 0.21823390614409932 0.021137046350087643 0.016279951163710223
#AF2 SwissProt
# June 4, 2023
#ACDEFGHIKLMNPQRSTVWY
0.034426975947981144 0.033208414219209156 0.18404163279880928 0.018845173581160408 0.023106037152191602 0.024921394845384612 0.028174588152144145 0.016488184182630747 0.014660738266896399 0.08201603241748119 0.006207818999515547 0.02770227060714815 0.0890314292376826 0.04996411034912452 0.031582146390535824 0.07714301207074263 0.015701061346461074 0.20506960741456495 0.017787020895291238 0.019922351125044764
#https://github.com/steineggerlab/foldseek/blob/master/data/mat3di.out
#Oct 22, 2021
#ACDEFGHIKLMNPQRSTVWYX
0.0489372 0.0306991 0.101049 0.0329671 0.0276149 0.0416262 0.0452521 0.030876 0.0297251 0.0607036 0.0150238 0.0215826 0.0783843 0.0512926 0.0264886 0.0610702 0.0201311 0.215998 0.0310265 0.0295417 0.00001