diff --git a/docs/installation.md b/docs/installation.md index 032421b4..5418295a 100644 --- a/docs/installation.md +++ b/docs/installation.md @@ -34,12 +34,16 @@ The DGE interface of pertpy requires additional dependencies that can be install pip install pertpy[de] ``` -Note that edger in pertpy requires edger to be installed: +Note that edger in pertpy requires edger and rpy2 to be installed: ```R BiocManager::install("edgeR") ``` +```console +pip install rpy2 +``` + ## From sources The sources for pertpy can be downloaded from the [Github repo]. diff --git a/pyproject.toml b/pyproject.toml index 1ca348a6..7139813d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -75,7 +75,6 @@ coda = [ de = [ "formulaic", "pydeseq2", - "rpy2" ] dev = [ "pre-commit",