This repository has been archived by the owner on Nov 26, 2022. It is now read-only.
Catalyst Will Not Install on MacOS Mojave #564
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Same issue here! Is this project still actively maintained? Last update on master is Nov 11, 2018?! |
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Dear Catalyst Maintainers,
Before I tell you about my issue, let me describe my environment:
Environment
Operating System: MacOS Mojave (10.14.6)
Python Version: 3.6
Python Bitness: 64
How did you install Catalyst: Conda with pip, per web site instructions
Python packages: The following NEW packages will be INSTALLED:
blas pkgs/main/osx-64::blas-1.0-mkl
ca-certificates pkgs/main/osx-64::ca-certificates-2019.10.16-0
certifi pkgs/main/osx-64::certifi-2019.9.11-py36_0
intel-openmp pkgs/main/osx-64::intel-openmp-2019.4-233
libcxx pkgs/main/osx-64::libcxx-4.0.1-hcfea43d_1
libcxxabi pkgs/main/osx-64::libcxxabi-4.0.1-hcfea43d_1
libedit pkgs/main/osx-64::libedit-3.1.20181209-hb402a30_0
libffi pkgs/main/osx-64::libffi-3.2.1-h475c297_4
libgfortran pkgs/main/osx-64::libgfortran-3.0.1-h93005f0_2
mkl pkgs/main/osx-64::mkl-2019.4-233
mkl-service pkgs/main/osx-64::mkl-service-2.3.0-py36hfbe908c_0
mkl_fft pkgs/main/osx-64::mkl_fft-1.0.15-py36h5e564d8_0
mkl_random pkgs/main/osx-64::mkl_random-1.1.0-py36ha771720_0
ncurses pkgs/main/osx-64::ncurses-6.1-h0a44026_1
numpy pkgs/main/osx-64::numpy-1.17.3-py36h4174a10_0
numpy-base pkgs/main/osx-64::numpy-base-1.17.3-py36h6575580_0
openssl pkgs/main/osx-64::openssl-1.1.1d-h1de35cc_3
pip pkgs/main/osx-64::pip-19.3.1-py36_0
python pkgs/main/osx-64::python-3.6.9-h359304d_0
readline pkgs/main/osx-64::readline-7.0-h1de35cc_5
scipy pkgs/main/osx-64::scipy-1.3.1-py36h1410ff5_0
setuptools pkgs/main/osx-64::setuptools-41.6.0-py36_0
six pkgs/main/osx-64::six-1.13.0-py36_0
sqlite pkgs/main/osx-64::sqlite-3.30.1-ha441bb4_0
tk pkgs/main/osx-64::tk-8.6.8-ha441bb4_0
wheel pkgs/main/osx-64::wheel-0.33.6-py36_0
xz pkgs/main/osx-64::xz-5.2.4-h1de35cc_4
zlib pkgs/main/osx-64::zlib-1.2.11-h1de35cc_3
Now that you know a little about me, let me tell you about the issue I am
having:
What did you expect to happen?
After failing to install Catalyst on Python 3.6 with the yml file, I attempted to use the alternate steps recommended after failure.
What happened instead?
A train wreck. :) Mutiple issues as shown below and, in particular failure to build bcolze wheel and install GCC
Building wheel for bcolz (setup.py) ... error
ERROR: Command errored out with exit status 1:
(catalyst) Davids-MacBook-Pro:~ david$ pip install enigma-catalyst matplotlib --ignore-installed
Processing ./Library/Caches/pip/wheels/7d/d6/73/5666f4b95c9cf4b926a00b6ab66229f0f2334d5b8fe38b0352/enigma_catalyst-0.5.21-cp36-cp36m-macosx_10_7_x86_64.whl
Collecting matplotlib
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Processing ./Library/Caches/pip/wheels/f4/0c/f6/ce6b2d1aa459ee97cc3c0f82236302bd62d89c86c700219463/toolz-0.9.0-cp36-none-any.whl
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Collecting bcolz==1.2.1
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Processing ./Library/Caches/pip/wheels/f2/bf/ec/e0f39aa27001525ad455139ee57ec7d0776fe074dfd78c97e4/Bottleneck-1.2.1-cp36-cp36m-macosx_10_7_x86_64.whl
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Using cached https://files.pythonhosted.org/packages/03/92/705fe8aca27678e01bbdd7738173b8e7df0088a2202c80352f664630d638/typing_extensions-3.7.4.1-py3-none-any.whl
Processing ./Library/Caches/pip/wheels/ed/38/77/dbc738643898bcd7545369207a86dcc752b9be6312c738ebcb/pycares-3.0.0-cp36-cp36m-macosx_10_7_x86_64.whl
Collecting pycryptodome<4,>=3.6.6; extra == "pycryptodome"
Using cached https://files.pythonhosted.org/packages/b4/b1/1c9fff23d516d080981f24f7b282fa390c97bea9bdc665f1fb8fd263d0c3/pycryptodome-3.9.3-cp36-cp36m-macosx_10_6_intel.whl
Collecting attrdict<3,>=2.0.0
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Collecting eth-keyfile<0.6.0,>=0.5.0
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Collecting eth-keys<0.3.0,>=0.2.0b3
Using cached https://files.pythonhosted.org/packages/61/4f/d8e778e377e0b9287b5ffc7ecc4e3b1e9d3045030d391acc7328e23708f2/eth_keys-0.2.4-py3-none-any.whl
Collecting eth-rlp<1,>=0.1.2
Using cached https://files.pythonhosted.org/packages/56/4b/b309fb44dd9bb975e84f3d626392eec1eeed0108e55a51cd7dd8956a73ad/eth_rlp-0.1.2-py3-none-any.whl
Collecting eth-typing<3.0.0,>=2.0.0
Using cached https://files.pythonhosted.org/packages/6d/6a/c117936e8ac47ed864d44bb422ad34c958cd80759c9f14255e79ab6fb458/eth_typing-2.2.0-py3-none-any.whl
Processing ./Library/Caches/pip/wheels/b7/8d/e7/a0e74217da5caeb3c1c7689639b6d28ddbf9985b840bc96a9a/parsimonious-0.8.1-cp36-none-any.whl
Collecting cffi>=1.5.0
Using cached https://files.pythonhosted.org/packages/c1/ae/bcf26260176ca7ea576f4c7ddf8dc2a5397d8792699dc9dce2790851958e/cffi-1.13.2-cp36-cp36m-macosx_10_6_intel.whl
Collecting rlp<2,>=0.6.0
Using cached https://files.pythonhosted.org/packages/54/d4/3013691b8c4702cb1c3253be643f2cef12e9bee93e134694e6dab83f41e2/rlp-1.1.0-py2.py3-none-any.whl
Processing ./Library/Caches/pip/wheels/f2/9a/90/de94f8556265ddc9d9c8b271b0f63e57b26fb1d67a45564511/pycparser-2.19-py2.py3-none-any.whl
Building wheels for collected packages: bcolz
Building wheel for bcolz (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /Users/david/anaconda3/envs/catalyst/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/setup.py'"'"'; file='"'"'/private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' bdist_wheel -d /private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-wheel-fs__ibnq --python-tag cp36
cwd: /private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/
Complete output (116 lines):
SSE2 detected
AVX2 detected
running bdist_wheel
running build
running build_py
creating build
creating build/lib.macosx-10.7-x86_64-3.6
creating build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/py2help_tests.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/version.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/toplevel.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/utils.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/chunked_eval.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/defaults.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/py2help.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/arrayprint.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
creating build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_ndcarray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_carray_objects.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/all.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/common.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_queries.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_carray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/carray_ext.pxd -> build/lib.macosx-10.7-x86_64-3.6/bcolz
running build_ext
skipping 'bcolz/carray_ext.c' Cython extension (up-to-date)
building 'bcolz.carray_ext' extension
creating build/temp.macosx-10.7-x86_64-3.6
creating build/temp.macosx-10.7-x86_64-3.6/bcolz
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zlib-1.2.8
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/compress
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/dictBuilder
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/decompress
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/legacy
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/common
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/deprecated
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c bcolz/carray_ext.c -o build/temp.macosx-10.7-x86_64-3.6/bcolz/carray_ext.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
In file included from bcolz/carray_ext.c:525:
In file included from /Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with "
^
1 warning generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/blosc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/blosc.c:874:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
c-blosc/blosc/blosc.c:1656:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
c-blosc/blosc/blosc.c:2136:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
3 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/bitshuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/bitshuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/shuffle.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
In file included from c-blosc/blosc/shuffle.c:11:
c-blosc/blosc/shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function]
static void shuffle_generic_inline(const size_t type_size,
^
c-blosc/blosc/shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function]
static void unshuffle_generic_inline(const size_t type_size,
^
2 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/fastcopy.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/fastcopy.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/fastcopy.c:137:30: warning: unused function 'copy_32_bytes_aligned' [-Wunused-function]
static inline unsigned char *copy_32_bytes_aligned(unsigned char *out, const unsigned char *from) {
^
c-blosc/blosc/fastcopy.c:270:30: warning: unused function 'chunk_memcpy_32' [-Wunused-function]
static inline unsigned char *chunk_memcpy_32(unsigned char *out, const unsigned char *from, unsigned len) {
^
c-blosc/blosc/fastcopy.c:294:30: warning: unused function 'chunk_memcpy_32_unrolled' [-Wunused-function]
static inline unsigned char *chunk_memcpy_32_unrolled(unsigned char *out, const unsigned char *from, unsigned len) {
^
c-blosc/blosc/fastcopy.c:402:30: warning: unused function 'chunk_memcpy_aligned' [-Wunused-function]
static inline unsigned char *chunk_memcpy_aligned(unsigned char *out, const unsigned char *from, unsigned len) {
^
4 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/blosclz.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosclz.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/blosclz.c:148:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) {
~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~
c-blosc/blosc/blosclz.c:219:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) {
~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~
c-blosc/blosc/blosclz.c:82:24: warning: unused function 'get_run' [-Wunused-function]
static inline uint8_t *get_run(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) {
^
c-blosc/blosc/blosclz.c:110:24: warning: unused function 'get_run_16' [-Wunused-function]
static inline uint8_t *get_run_16(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) {
^
4 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/shuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
warning: include path for stdlibc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc:29:10: fatal error: 'algorithm' file not found
#include
^~~~~~~~~~~
1 warning and 1 error generated.
error: command 'gcc' failed with exit status 1
ERROR: Failed building wheel for bcolz
Running setup.py clean for bcolz
Failed to build bcolz
Installing collected packages: redo, numpy, six, patsy, scipy, python-dateutil, pytz, pandas, statsmodels, pip, click, sqlalchemy, MarkupSafe, Mako, python-editor, alembic, jmespath, docutils, botocore, s3transfer, boto3, numexpr, tables, idna, urllib3, chardet, certifi, requests, setuptools, requests-toolbelt, toolz, multidict, yarl, idna-ssl, attrs, async-timeout, typing-extensions, aiohttp, lru-dict, pycryptodome, eth-hash, cytoolz, eth-typing, eth-utils, attrdict, eth-keys, eth-keyfile, rlp, hexbytes, eth-rlp, eth-account, websockets, parsimonious, eth-abi, web3, pycparser, cffi, pycares, aiodns, cchardet, ccxt, bcolz, requests-file, wrapt, requests-ftp, lxml, pandas-datareader, Cython, sortedcontainers, intervaltree, bottleneck, decorator, empyrical, cyordereddict, Logbook, contextlib2, networkx, multipledispatch, enigma-catalyst, pyparsing, cycler, kiwisolver, matplotlib
Running setup.py install for bcolz ... error
ERROR: Command errored out with exit status 1:
command: /Users/david/anaconda3/envs/catalyst/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/setup.py'"'"'; file='"'"'/private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-record-flf9o_wl/install-record.txt --single-version-externally-managed --compile
cwd: /private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/
Complete output (116 lines):
SSE2 detected
AVX2 detected
running install
running build
running build_py
creating build
creating build/lib.macosx-10.7-x86_64-3.6
creating build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/py2help_tests.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/version.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/toplevel.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/utils.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/chunked_eval.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/defaults.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/py2help.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
copying bcolz/arrayprint.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz
creating build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_ndcarray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_carray_objects.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_attrs.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/init.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/all.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/common.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_queries.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_ctable.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/tests/test_carray.py -> build/lib.macosx-10.7-x86_64-3.6/bcolz/tests
copying bcolz/carray_ext.pxd -> build/lib.macosx-10.7-x86_64-3.6/bcolz
running build_ext
skipping 'bcolz/carray_ext.c' Cython extension (up-to-date)
building 'bcolz.carray_ext' extension
creating build/temp.macosx-10.7-x86_64-3.6
creating build/temp.macosx-10.7-x86_64-3.6/bcolz
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zlib-1.2.8
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/compress
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/dictBuilder
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/decompress
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/legacy
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/common
creating build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/zstd-1.3.4/deprecated
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c bcolz/carray_ext.c -o build/temp.macosx-10.7-x86_64-3.6/bcolz/carray_ext.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
In file included from bcolz/carray_ext.c:525:
In file included from /Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18:
In file included from /Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:
/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it by "
^
1 warning generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/blosc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/blosc.c:874:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
c-blosc/blosc/blosc.c:1656:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
c-blosc/blosc/blosc.c:2136:7: warning: unused variable 'rc' [-Wunused-variable]
int rc;
^
3 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/bitshuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/bitshuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/shuffle.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
In file included from c-blosc/blosc/shuffle.c:11:
c-blosc/blosc/shuffle-generic.h:32:13: warning: unused function 'shuffle_generic_inline' [-Wunused-function]
static void shuffle_generic_inline(const size_t type_size,
^
c-blosc/blosc/shuffle-generic.h:61:13: warning: unused function 'unshuffle_generic_inline' [-Wunused-function]
static void unshuffle_generic_inline(const size_t type_size,
^
2 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/fastcopy.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/fastcopy.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/fastcopy.c:137:30: warning: unused function 'copy_32_bytes_aligned' [-Wunused-function]
static inline unsigned char *copy_32_bytes_aligned(unsigned char *out, const unsigned char *from) {
^
c-blosc/blosc/fastcopy.c:270:30: warning: unused function 'chunk_memcpy_32' [-Wunused-function]
static inline unsigned char *chunk_memcpy_32(unsigned char *out, const unsigned char *from, unsigned len) {
^
c-blosc/blosc/fastcopy.c:294:30: warning: unused function 'chunk_memcpy_32_unrolled' [-Wunused-function]
static inline unsigned char *chunk_memcpy_32_unrolled(unsigned char *out, const unsigned char *from, unsigned len) {
^
c-blosc/blosc/fastcopy.c:402:30: warning: unused function 'chunk_memcpy_aligned' [-Wunused-function]
static inline unsigned char *chunk_memcpy_aligned(unsigned char *out, const unsigned char *from, unsigned len) {
^
4 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/blosclz.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/blosclz.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
c-blosc/blosc/blosclz.c:148:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) {
~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~
c-blosc/blosc/blosclz.c:219:35: warning: comparison of integers of different signs: 'int' and 'unsigned int' [-Wsign-compare]
if (_mm256_movemask_epi8(cmp) != 0xFFFFFFFF) {
~~~~~~~~~~~~~~~~~~~~~~~~~ ^ ~~~~~~~~~~
c-blosc/blosc/blosclz.c:82:24: warning: unused function 'get_run' [-Wunused-function]
static inline uint8_t *get_run(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) {
^
c-blosc/blosc/blosclz.c:110:24: warning: unused function 'get_run_16' [-Wunused-function]
static inline uint8_t *get_run_16(uint8_t *ip, const uint8_t *ip_bound, const uint8_t *ref) {
^
4 warnings generated.
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/blosc/shuffle-generic.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/blosc/shuffle-generic.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4hc.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/internal-complibs/lz4-1.8.1.2/lz4.c -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/lz4-1.8.1.2/lz4.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -I/Users/david/anaconda3/envs/catalyst/include -arch x86_64 -DHAVE_LZ4=1 -DHAVE_SNAPPY=1 -DHAVE_ZLIB=1 -DHAVE_ZSTD=1 -Ibcolz -Ic-blosc/blosc -Ic-blosc/internal-complibs/zstd-1.3.4 -Ic-blosc/internal-complibs/lz4-1.8.1.2 -Ic-blosc/internal-complibs/snappy-1.1.1 -Ic-blosc/internal-complibs/zlib-1.2.8 -Ic-blosc/internal-complibs/zstd-1.3.4/compress -Ic-blosc/internal-complibs/zstd-1.3.4/dictBuilder -Ic-blosc/internal-complibs/zstd-1.3.4/decompress -Ic-blosc/internal-complibs/zstd-1.3.4/legacy -Ic-blosc/internal-complibs/zstd-1.3.4/common -Ic-blosc/internal-complibs/zstd-1.3.4/dll -Ic-blosc/internal-complibs/zstd-1.3.4/deprecated -I/Users/david/anaconda3/envs/catalyst/lib/python3.6/site-packages/numpy/core/include -I/Users/david/anaconda3/envs/catalyst/include/python3.6m -c c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc -o build/temp.macosx-10.7-x86_64-3.6/c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.o -DSHUFFLE_SSE2_ENABLED -msse2 -DSHUFFLE_AVX2_ENABLED -mavx2
warning: include path for stdlibc++ headers not found; pass '-stdlib=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]
c-blosc/internal-complibs/snappy-1.1.1/snappy-stubs-internal.cc:29:10: fatal error: 'algorithm' file not found
#include
^~~~~~~~~~~
1 warning and 1 error generated.
error: command 'gcc' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /Users/david/anaconda3/envs/catalyst/bin/python -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/setup.py'"'"'; file='"'"'/private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-install-9p45ypdq/bcolz/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' install --record /private/var/folders/d4/_6xpn13j2t762s_81w8854f00000gp/T/pip-record-flf9o_wl/install-record.txt --single-version-externally-managed --compile Check the logs for full command output.
Here is how you can reproduce this issue on your machine:
Follow instructions on your web site
...
What steps have you taken to resolve this already?
Based on web research:
Updated numpy to 1.16.0
Installed new headers
sudo installer -pkg
/Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg - target /
Installed GCC from Conda
As far as I can determine, none of these actions made any difference. I note catalyst incorporates Zipline, which I have not been able to use successfully on my system. I wonder if there is any connection?
Thanks.
David Wilt
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