diff --git a/cv.htm b/cv.htm index 03ca668..c16510b 100644 --- a/cv.htm +++ b/cv.htm @@ -2,61 +2,71 @@

    Sean Conlan, PhD

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    generated: Sun Jul 25 15:25:19 EDT 2021 covering 20000 days prior. 56 references

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  1. Proctor DM, Dangana T, Sexton DJ, Fukuda C, Yelin RD, Stanley M, Bell PB, Baskaran S, Deming C, Chen Q, Conlan S, Park M, Welsh RM, Vallabhaneni S, Chiller T, Forsberg K, Black SR, Pacilli M, Kong HH, Lin MY, Schoeny ME, Litvintseva AP, Segre JA, Hayden MK "Integrated genomic, epidemiologic investigation of Candida auris skin colonization in a skilled nursing facility." Nat Med. 2021 Jun 21. pii: 10.1038/s41591-021-01383-w. doi: 10.1038/s41591-021-01383-w. [34155414] -
  2. Falcone EL, Han Y, Kreuzburg S, Heller T, Church JA, Grou C, Calderon V, Subramanian P, Deming C, Conlan S, Segre JA, Holland SM, Zerbe CS "Exclusive enteral nutrition induced sustained changes in the microbiota and improved inflammatory bowel disease in a pediatric patient with chronic granulomatous disease." J Allergy Clin Immunol Pract. 2021 Feb;9(2):1011-1014.e2. doi: 10.1016/j.jaip.2020.12.014. Epub 2020 Dec 15. [33338684] -
  3. Greathouse KL, White JR, Vargas AJ, Bliskovsky VV, Beck JA, von Muhlinen N, Polley EC, Bowman ED, Khan MA, Robles AI, Cooks T, Ryan BM, Padgett N, Dzutsev AH, Trinchieri G, Pineda MA, Bilke S, Meltzer PS, Hokenstad AN, Stickrod TM, Walther-Antonio MR, Earl JP, Mell JC, Krol JE, Balashov SV, Bhat AS, Ehrlich GD, Valm A, Deming C, Conlan S, Oh J, Segre JA, Harris CC "Author Correction: Interaction between the microbiome and TP53 in human lung cancer." Genome Biol. 2020 Feb 20;21(1):41. doi: 10.1186/s13059-020-01961-0. [32079537] -
  4. Singer JR, Blosser EG, Zindl CL, Silberger DJ, Conlan S, Laufer VA, DiToro D, Deming C, Kumar R, Morrow CD, Segre JA, Gray MJ, Randolph DA, Weaver CT "Preventing dysbiosis of the neonatal mouse intestinal microbiome protects against late-onset sepsis." Nat Med. 2019 Nov;25(11):1772-1782. doi: 10.1038/s41591-019-0640-y. Epub 2019 Nov 7. [31700190] -
  5. Conlan S, Lau AF, Deming C, Spalding CD, Lee-Lin S, Thomas PJ, Park M, Dekker JP, Frank KM, Palmore TN, Segre JA "Plasmid Dissemination and Selection of a Multidrug-Resistant Klebsiella pneumoniae Strain during Transplant-Associated Antibiotic Therapy." mBio. 2019 Oct 8;10(5). pii: mBio.00652-19. doi: 10.1128/mBio.00652-19. [31594809] +

    generated: Thu Nov 2 13:50:29 EDT 2023 covering 20000 days prior. 66 references

    +
  6. Blaustein RA, Shen Z, Kashaf SS, Lee-Lin S, Conlan S, Bosticardo M, Delmonte OM, Holmes CJ, Taylor ME, Banania G, Nagao K, Dimitrova D, Kanakry JA, Su H, Holland SM, Bergerson JRE, Freeman AF, Notarangelo LD, Kong HH, Segre JA "Expanded microbiome niches of RAG-deficient patients." Cell Rep Med. 2023 Oct 17;4(10):101205. doi: 10.1016/j.xcrm.2023.101205. Epub 2023 Sep 26. [37757827] +
  7. Chandrasekaran P, Han Y, Zerbe CS, Heller T, DeRavin SS, Kreuzberg SA, Marciano BE, Siu Y, Jones DR, Abraham RS, Stephens MC, Tsou AM, Snapper S, Conlan S, Subramanian P, Quinones M, Grou C, Calderon V, Deming C, Leiding JW, Arnold DE, Logan BR, Griffith LM, Petrovic A, Mousallem TI, Kapoor N, Heimall JR, Barnum JL, Kapadia M, Wright N, Rayes A, Chandra S, Broglie LA, Chellapandian D, Deal CL, Grunebaum E, Lim SS, Mallhi K, Marsh RA, Murguia-Favela L, Parikh S, Touzot F, Cowan MJ, Dvorak CC, Haddad E, Kohn DB, Notarangelo LD, Pai SY, Puck JM, Pulsipher MA, Torgerson TR, Kang EM, Malech HL, Segre JA, Bryant CE, Holland SM, Falcone EL "Intestinal microbiome and metabolome signatures in patients with chronic granulomatous disease." J Allergy Clin Immunol. 2023 Sep 1:S0091-6749(23)01101-6. doi: 10.1016/j.jaci.2023.07.022. [37659505] +
  8. Joglekar P, Conlan S, Lee-Lin SQ, Deming C, Kashaf SS, Kong HH, Segre JA "Integrated genomic and functional analyses of human skin-associated Staphylococcus reveals extensive inter- and intra-species diversity." bioRxiv. 2023 Jun 23:2023.06.22.546190. doi: 10.1101/2023.06.22.546190. Preprint. [37503282] +
  9. Ahmed NM, Joglekar P, Deming C, Lemon KP, Kong HH, Segre JA, Conlan S "Genomic characterization of the C. tuberculostearicum species complex, a ubiquitous member of the human skin microbiome." bioRxiv. 2023 Jun 17:2023.06.16.545375. doi: 10.1101/2023.06.16.545375. Preprint. [37502876] +
  10. Shen Z, Robert L, Stolpman M, Che Y, Walsh A, Saffery R, Allen KJ, Eckert J, Young A, Deming C, Chen Q, Conlan S, Laky K, Li JM, Chatman L, Saheb Kashaf S, Kong HH, Frischmeyer-Guerrerio PA, Perrett KP, Segre JA "A genome catalog of the early-life human skin microbiome." bioRxiv. 2023 May 24:2023.05.22.541509. doi: 10.1101/2023.05.22.541509. Preprint. [37398010] +
  11. Tran TH, Roberts AQ, Escapa IF, Gao W, Segre JA, Kong HH, Conlan S, Kelly MS, Lemon KP "Metabolic capabilities are highly conserved among human nasal-associated Corynebacterium species in pangenomic analyses." bioRxiv. 2023 Jun 5:2023.06.05.543719. doi: 10.1101/2023.06.05.543719. Preprint. [37333201] +
  12. Saheb Kashaf S, Harkins CP, Deming C, Joglekar P, Conlan S, Holmes CJ, Almeida A, Finn RD, Segre JA, Kong HH "Staphylococcal diversity in atopic dermatitis from an individual to a global scale." Cell Host Microbe. 2023 Apr 12;31(4):578-592.e6. doi: 10.1016/j.chom.2023.03.010. [37054678] +
  13. Drummond RA, Desai JV, Ricotta EE, Swamydas M, Deming C, Conlan S, Quinones M, Matei-Rascu V, Sherif L, Lecky D, Lee CR, Green NM, Collins N, Zelazny AM, Prevots DR, Bending D, Withers D, Belkaid Y, Segre JA, Lionakis MS "Long-term antibiotic exposure promotes mortality after systemic fungal infection by driving lymphocyte dysfunction and systemic escape of commensal bacteria." Cell Host Microbe. 2022 Jul 13;30(7):1020-1033.e6. doi: 10.1016/j.chom.2022.04.013. Epub 2022 May 13. [35568028] +
  14. Sim CK, Kashaf SS, Stacy A, Proctor DM, Almeida A, Bouladoux N, Chen M, Finn RD, Belkaid Y, Conlan S, Segre JA "A mouse model of occult intestinal colonization demonstrating antibiotic-induced outgrowth of carbapenem-resistant Enterobacteriaceae." Microbiome. 2022 Mar 10;10(1):43. doi: 10.1186/s40168-021-01207-6. [35272717] +
  15. Huang X, Welsh RM, Deming C, Proctor DM, Thomas PJ, Gussin GM, Huang SS, Kong HH, Bentz ML, Vallabhaneni S, Chiller T, Jackson BR, Forsberg K, Conlan S, Litvintseva AP, Segre JA "Skin Metagenomic Sequence Analysis of Early Candida auris Outbreaks in U.S. Nursing Homes." mSphere. 2021 Aug 25;6(4):e0028721. doi: 10.1128/mSphere.00287-21. Epub 2021 Aug 4. [34346704] +
  16. Proctor DM, Dangana T, Sexton DJ, Fukuda C, Yelin RD, Stanley M, Bell PB, Baskaran S, Deming C, Chen Q, Conlan S, Park M, Welsh RM, Vallabhaneni S, Chiller T, Forsberg K, Black SR, Pacilli M, Kong HH, Lin MY, Schoeny ME, Litvintseva AP, Segre JA, Hayden MK "Integrated genomic, epidemiologic investigation of Candida auris skin colonization in a skilled nursing facility." Nat Med. 2021 Aug;27(8):1401-1409. doi: 10.1038/s41591-021-01383-w. Epub 2021 Jun 21. [34155414] +
  17. Falcone EL, Han Y, Kreuzburg S, Heller T, Church JA, Grou C, Calderon V, Subramanian P, Deming C, Conlan S, Segre JA, Holland SM, Zerbe CS "Exclusive enteral nutrition induced sustained changes in the microbiota and improved inflammatory bowel disease in a pediatric patient with chronic granulomatous disease." J Allergy Clin Immunol Pract. 2021 Feb;9(2):1011-1014.e2. doi: 10.1016/j.jaip.2020.12.014. Epub 2020 Dec 15. [33338684] +
  18. Greathouse KL, White JR, Vargas AJ, Bliskovsky VV, Beck JA, von Muhlinen N, Polley EC, Bowman ED, Khan MA, Robles AI, Cooks T, Ryan BM, Padgett N, Dzutsev AH, Trinchieri G, Pineda MA, Bilke S, Meltzer PS, Hokenstad AN, Stickrod TM, Walther-Antonio MR, Earl JP, Mell JC, Krol JE, Balashov SV, Bhat AS, Ehrlich GD, Valm A, Deming C, Conlan S, Oh J, Segre JA, Harris CC "Author Correction: Interaction between the microbiome and TP53 in human lung cancer." Genome Biol. 2020 Feb 20;21(1):41. doi: 10.1186/s13059-020-01961-0. [32079537] +
  19. Singer JR, Blosser EG, Zindl CL, Silberger DJ, Conlan S, Laufer VA, DiToro D, Deming C, Kumar R, Morrow CD, Segre JA, Gray MJ, Randolph DA, Weaver CT "Preventing dysbiosis of the neonatal mouse intestinal microbiome protects against late-onset sepsis." Nat Med. 2019 Nov;25(11):1772-1782. doi: 10.1038/s41591-019-0640-y. Epub 2019 Nov 7. [31700190] +
  20. Conlan S, Lau AF, Deming C, Spalding CD, Lee-Lin S, Thomas PJ, Park M, Dekker JP, Frank KM, Palmore TN, Segre JA "Plasmid Dissemination and Selection of a Multidrug-Resistant Klebsiella pneumoniae Strain during Transplant-Associated Antibiotic Therapy." mBio. 2019 Oct 8;10(5):e00652-19. doi: 10.1128/mBio.00652-19. [31594809]
  21. Johnson RC, Deming C, Conlan S, Zellmer CJ, Michelin AV, Lee-Lin S, Thomas PJ, Park M, Weingarten RA, Less J, Dekker JP, Frank KM, Musser KA, McQuiston JR, Henderson DK, Lau AF, Palmore TN, Segre JA "Investigation of a Cluster of Sphingomonas koreensis Infections." N Engl J Med. 2018 Dec 27;379(26):2529-2539. doi: 10.1056/NEJMoa1803238. [30586509] -
  22. Tirosh O, Conlan S, Deming C, Lee-Lin SQ, Huang X, Su HC, Freeman AF, Segre JA, Kong HH "Expanded skin virome in DOCK8-deficient patients." Nat Med. 2018 Dec;24(12):1815-1821. doi: 10.1038/s41591-018-0211-7. Epub 2018 Nov 5. [30397357] +
  23. Tirosh O, Conlan S, Deming C, Lee-Lin SQ, Huang X, Su HC, Freeman AF, Segre JA, Kong HH "Expanded skin virome in DOCK8-deficient patients." Nat Med. 2018 Dec;24(12):1815-1821. doi: 10.1038/s41591-018-0211-7. Epub 2018 Nov 5. [30397357]
  24. Greathouse KL, White JR, Vargas AJ, Bliskovsky VV, Beck JA, von Muhlinen N, Polley EC, Bowman ED, Khan MA, Robles AI, Cooks T, Ryan BM, Padgett N, Dzutsev AH, Trinchieri G, Pineda MA, Bilke S, Meltzer PS, Hokenstad AN, Stickrod TM, Walther-Antonio MR, Earl JP, Mell JC, Krol JE, Balashov SV, Bhat AS, Ehrlich GD, Valm A, Deming C, Conlan S, Oh J, Segre JA, Harris CC "Interaction between the microbiome and TP53 in human lung cancer." Genome Biol. 2018 Aug 24;19(1):123. doi: 10.1186/s13059-018-1501-6. [30143034] -
  25. Weingarten RA, Johnson RC, Conlan S, Ramsburg AM, Dekker JP, Lau AF, Khil P, Odom RT, Deming C, Park M, Thomas PJ, Henderson DK, Palmore TN, Segre JA, Frank KM "Genomic Analysis of Hospital Plumbing Reveals Diverse Reservoir of Bacterial Plasmids Conferring Carbapenem Resistance." mBio. 2018 Feb 6;9(1). pii: mBio.02011-17. doi: 10.1128/mBio.02011-17. [29437920] -
  26. Byrd AL, Deming C, Cassidy SKB, Harrison OJ, Ng WI, Conlan S, Belkaid Y, Segre JA, Kong HH "Staphylococcus aureus and Staphylococcus epidermidis strain diversity underlying pediatric atopic dermatitis." Sci Transl Med. 2017 Jul 5;9(397). pii: 9/397/eaal4651. doi: 10.1126/scitranslmed.aal4651. [28679656] -
  27. Chen M, Conlan S, Lau AF, Dekker JP, Deming C, Henderson DK, Frank KM, Palmore TN, Segre JA "Whole-Genome Sequencing Overrules a Suspected Case of Carbapenem-Resistant Enterobacter cloacae Transmission." J Clin Microbiol. 2017 Sep;55(9):2868-2870. doi: 10.1128/JCM.00915-17. Epub 2017 Jun 28. [28659317] -
  28. Decker BK, Lau AF, Dekker JP, Spalding CD, Sinaii N, Conlan S, Henderson DK, Segre JA, Frank KM, Palmore TN "Healthcare personnel intestinal colonization with multidrug-resistant organisms." Clin Microbiol Infect. 2018 Jan;24(1):82.e1-82.e4. doi: 10.1016/j.cmi.2017.05.010. Epub 2017 May 12. [28506784] -
  29. Jo JH, Deming C, Kennedy EA, Conlan S, Polley EC, Ng WI, Segre JA, Kong HH "Diverse Human Skin Fungal Communities in Children Converge in Adulthood." J Invest Dermatol. 2016 Dec;136(12):2356-2363. doi: 10.1016/j.jid.2016.05.130. Epub 2016 Jul 29. [27476723] -
  30. Conlan S, Lau AF, Palmore TN, Frank KM, Segre JA "Complete Genome Sequence of a Klebsiella pneumoniae Strain Carrying blaNDM-1 on a Multidrug Resistance Plasmid." Genome Announc. 2016 Jul 14;4(4). pii: 4/4/e00664-16. doi: 10.1128/genomeA.00664-16. [27417839] -
  31. Conlan S, Park M, Deming C, Thomas PJ, Young AC, Coleman H, Sison C, Weingarten RA, Lau AF, Dekker JP, Palmore TN, Frank KM, Segre JA "Plasmid Dynamics in KPC-Positive Klebsiella pneumoniae during Long-Term Patient Colonization." mBio. 2016 Jun 28;7(3). pii: mBio.00742-16. doi: 10.1128/mBio.00742-16. [27353756] -
  32. Hardiman CA, Weingarten RA, Conlan S, Khil P, Dekker JP, Mathers AJ, Sheppard AE, Segre JA, Frank KM "Horizontal Transfer of Carbapenemase-Encoding Plasmids and Comparison with Hospital Epidemiology Data." Antimicrob Agents Chemother. 2016 Jul 22;60(8):4910-9. doi: 10.1128/AAC.00014-16. Print 2016 Aug. [27270289] -
  33. Hughes HY, Conlan S, Lau AF, Dekker JP, Michelin AV, Youn JH, Henderson DK, Frank KM, Segre JA, Palmore TN "Detection and Whole-Genome Sequencing of Carbapenemase-Producing Aeromonas hydrophila Isolates from Routine Perirectal Surveillance Culture." J Clin Microbiol. 2016 Apr;54(4):1167-70. doi: 10.1128/JCM.03229-15. Epub 2016 Feb 17. [26888898] -
  34. Dotson GA, Dekker JP, Palmore TN, Segre JA, Conlan S "Draft Genome Sequence of a Klebsiella pneumoniae Carbapenemase-Positive Sequence Type 111 Pseudomonas aeruginosa Strain." Genome Announc. 2016 Feb 11;4(1). pii: 4/1/e01663-15. doi: 10.1128/genomeA.01663-15. [26868386] -
  35. Tsai YC, Conlan S, Deming C, Segre JA, Kong HH, Korlach J, Oh J "Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing." mBio. 2016 Feb 9;7(1):e01948-15. doi: 10.1128/mBio.01948-15. [26861018] -
  36. Conlan S, Deming C, Tsai YC, Lau AF, Dekker JP, Korlach J, Segre JA "Complete Genome Sequence of a Klebsiella pneumoniae Isolate with Chromosomally Encoded Carbapenem Resistance and Colibactin Synthesis Loci." Genome Announc. 2014 Dec 24;2(6). pii: 2/6/e01332-14. doi: 10.1128/genomeA.01332-14. [25540345] -
  37. Naik S, Bouladoux N, Linehan JL, Han SJ, Harrison OJ, Wilhelm C, Conlan S, Himmelfarb S, Byrd AL, Deming C, Quinones M, Brenchley JM, Kong HH, Tussiwand R, Murphy KM, Merad M, Segre JA, Belkaid Y "Commensal-dendritic-cell interaction specifies a unique protective skin immune signature." Nature. 2015 Apr 2;520(7545):104-8. doi: 10.1038/nature14052. Epub 2015 Jan 5. [25539086] +
  38. Weingarten RA, Johnson RC, Conlan S, Ramsburg AM, Dekker JP, Lau AF, Khil P, Odom RT, Deming C, Park M, Thomas PJ, Henderson DK, Palmore TN, Segre JA, Frank KM "Genomic Analysis of Hospital Plumbing Reveals Diverse Reservoir of Bacterial Plasmids Conferring Carbapenem Resistance." mBio. 2018 Feb 6;9(1):e02011-17. doi: 10.1128/mBio.02011-17. [29437920] +
  39. Byrd AL, Deming C, Cassidy SKB, Harrison OJ, Ng WI, Conlan S, Belkaid Y, Segre JA, Kong HH "Staphylococcus aureus and Staphylococcus epidermidis strain diversity underlying pediatric atopic dermatitis." Sci Transl Med. 2017 Jul 5;9(397):eaal4651. doi: 10.1126/scitranslmed.aal4651. [28679656] +
  40. Chen M, Conlan S, Lau AF, Dekker JP, Deming C, Henderson DK, Frank KM, Palmore TN, Segre JA "Whole-Genome Sequencing Overrules a Suspected Case of Carbapenem-Resistant Enterobacter cloacae Transmission." J Clin Microbiol. 2017 Sep;55(9):2868-2870. doi: 10.1128/JCM.00915-17. Epub 2017 Jun 28. [28659317] +
  41. Decker BK, Lau AF, Dekker JP, Spalding CD, Sinaii N, Conlan S, Henderson DK, Segre JA, Frank KM, Palmore TN "Healthcare personnel intestinal colonization with multidrug-resistant organisms." Clin Microbiol Infect. 2018 Jan;24(1):82.e1-82.e4. doi: 10.1016/j.cmi.2017.05.010. Epub 2017 May 12. [28506784] +
  42. Jo JH, Deming C, Kennedy EA, Conlan S, Polley EC, Ng WI, Segre JA, Kong HH "Diverse Human Skin Fungal Communities in Children Converge in Adulthood." J Invest Dermatol. 2016 Dec;136(12):2356-2363. doi: 10.1016/j.jid.2016.05.130. Epub 2016 Jul 29. [27476723] +
  43. Conlan S, Lau AF, Palmore TN, Frank KM, Segre JA "Complete Genome Sequence of a Klebsiella pneumoniae Strain Carrying blaNDM-1 on a Multidrug Resistance Plasmid." Genome Announc. 2016 Jul 14;4(4):e00664-16. doi: 10.1128/genomeA.00664-16. [27417839] +
  44. Conlan S, Park M, Deming C, Thomas PJ, Young AC, Coleman H, Sison C, Weingarten RA, Lau AF, Dekker JP, Palmore TN, Frank KM, Segre JA "Plasmid Dynamics in KPC-Positive Klebsiella pneumoniae during Long-Term Patient Colonization." mBio. 2016 Jun 28;7(3):e00742-16. doi: 10.1128/mBio.00742-16. [27353756] +
  45. Hardiman CA, Weingarten RA, Conlan S, Khil P, Dekker JP, Mathers AJ, Sheppard AE, Segre JA, Frank KM "Horizontal Transfer of Carbapenemase-Encoding Plasmids and Comparison with Hospital Epidemiology Data." Antimicrob Agents Chemother. 2016 Jul 22;60(8):4910-9. doi: 10.1128/AAC.00014-16. Print 2016 Aug. [27270289] +
  46. Hughes HY, Conlan S, Lau AF, Dekker JP, Michelin AV, Youn JH, Henderson DK, Frank KM, Segre JA, Palmore TN "Detection and Whole-Genome Sequencing of Carbapenemase-Producing Aeromonas hydrophila Isolates from Routine Perirectal Surveillance Culture." J Clin Microbiol. 2016 Apr;54(4):1167-70. doi: 10.1128/JCM.03229-15. Epub 2016 Feb 17. [26888898] +
  47. Dotson GA, Dekker JP, Palmore TN, Segre JA, Conlan S "Draft Genome Sequence of a Klebsiella pneumoniae Carbapenemase-Positive Sequence Type 111 Pseudomonas aeruginosa Strain." Genome Announc. 2016 Feb 11;4(1):e01663-15. doi: 10.1128/genomeA.01663-15. [26868386] +
  48. Tsai YC, Conlan S, Deming C, Segre JA, Kong HH, Korlach J, Oh J "Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing." mBio. 2016 Feb 9;7(1):e01948-15. doi: 10.1128/mBio.01948-15. [26861018] +
  49. Conlan S, Deming C, Tsai YC, Lau AF, Dekker JP, Korlach J, Segre JA "Complete Genome Sequence of a Klebsiella pneumoniae Isolate with Chromosomally Encoded Carbapenem Resistance and Colibactin Synthesis Loci." Genome Announc. 2014 Dec 24;2(6):e01332-14. doi: 10.1128/genomeA.01332-14. [25540345] +
  50. Naik S, Bouladoux N, Linehan JL, Han SJ, Harrison OJ, Wilhelm C, Conlan S, Himmelfarb S, Byrd AL, Deming C, Quinones M, Brenchley JM, Kong HH, Tussiwand R, Murphy KM, Merad M, Segre JA, Belkaid Y "Commensal-dendritic-cell interaction specifies a unique protective skin immune signature." Nature. 2015 Apr 2;520(7545):104-8. doi: 10.1038/nature14052. Epub 2015 Jan 5. [25539086]
  51. Oh J, Byrd AL, Deming C, Conlan S, Kong HH, Segre JA "Biogeography and individuality shape function in the human skin metagenome." Nature. 2014 Oct 2;514(7520):59-64. doi: 10.1038/nature13786. [25279917] -
  52. Conlan S, Thomas PJ, Deming C, Park M, Lau AF, Dekker JP, Snitkin ES, Clark TA, Luong K, Song Y, Tsai YC, Boitano M, Dayal J, Brooks SY, Schmidt B, Young AC, Thomas JW, Bouffard GG, Blakesley RW, Mullikin JC, Korlach J, Henderson DK, Frank KM, Palmore TN, Segre JA "Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae." Sci Transl Med. 2014 Sep 17;6(254):254ra126. doi: 10.1126/scitranslmed.3009845. [25232178] -
  53. van Duin D, Perez F, Rudin SD, Cober E, Hanrahan J, Ziegler J, Webber R, Fox J, Mason P, Richter SS, Cline M, Hall GS, Kaye KS, Jacobs MR, Kalayjian RC, Salata RA, Segre JA, Conlan S, Evans S, Fowler VG Jr, Bonomo RA "Surveillance of carbapenem-resistant Klebsiella pneumoniae: tracking molecular epidemiology and outcomes through a regional network." Antimicrob Agents Chemother. 2014 Jul;58(7):4035-41. doi: 10.1128/AAC.02636-14. Epub 2014 May 5. [24798270] -
  54. Curtis DS, Phillips AR, Callister SJ, Conlan S, McCue LA "SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes." Bioinformatics. 2013 Oct 15;29(20):2641-2. doi: 10.1093/bioinformatics/btt454. Epub 2013 Aug 16. [23956303] +
  55. Conlan S, Thomas PJ, Deming C, Park M, Lau AF, Dekker JP, Snitkin ES, Clark TA, Luong K, Song Y, Tsai YC, Boitano M, Dayal J, Brooks SY, Schmidt B, Young AC, Thomas JW, Bouffard GG, Blakesley RW, Mullikin JC, Korlach J, Henderson DK, Frank KM, Palmore TN, Segre JA "Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae." Sci Transl Med. 2014 Sep 17;6(254):254ra126. doi: 10.1126/scitranslmed.3009845. [25232178] +
  56. van Duin D, Perez F, Rudin SD, Cober E, Hanrahan J, Ziegler J, Webber R, Fox J, Mason P, Richter SS, Cline M, Hall GS, Kaye KS, Jacobs MR, Kalayjian RC, Salata RA, Segre JA, Conlan S, Evans S, Fowler VG Jr, Bonomo RA "Surveillance of carbapenem-resistant Klebsiella pneumoniae: tracking molecular epidemiology and outcomes through a regional network." Antimicrob Agents Chemother. 2014 Jul;58(7):4035-41. doi: 10.1128/AAC.02636-14. Epub 2014 May 5. [24798270] +
  57. Curtis DS, Phillips AR, Callister SJ, Conlan S, McCue LA "SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes." Bioinformatics. 2013 Oct 15;29(20):2641-2. doi: 10.1093/bioinformatics/btt454. Epub 2013 Aug 16. [23956303]
  58. Zelazny AM, Ding L, Goldberg JB, Mijares LA, Conlan S, Conville PS, Stock F, Ballentine SJ, Olivier KN, Sampaio EP, Murray PR, Holland SM "Adaptability and persistence of the emerging pathogen Bordetella petrii." PLoS One. 2013 Jun 4;8(6):e65102. doi: 10.1371/journal.pone.0065102. Print 2013. [23750235]
  59. Findley K, Oh J, Yang J, Conlan S, Deming C, Meyer JA, Schoenfeld D, Nomicos E, Park M, Kong HH, Segre JA "Topographic diversity of fungal and bacterial communities in human skin." Nature. 2013 Jun 20;498(7454):367-70. doi: 10.1038/nature12171. Epub 2013 May 22. [23698366] -
  60. Conlan S, Kong HH, Segre JA "Species-level analysis of DNA sequence data from the NIH Human Microbiome Project." PLoS One. 2012;7(10):e47075. doi: 10.1371/journal.pone.0047075. Epub 2012 Oct 10. [23071716] +
  61. Conlan S, Kong HH, Segre JA "Species-level analysis of DNA sequence data from the NIH Human Microbiome Project." PLoS One. 2012;7(10):e47075. doi: 10.1371/journal.pone.0047075. Epub 2012 Oct 10. [23071716]
  62. Oh J, Conlan S, Polley EC, Segre JA, Kong HH "Shifts in human skin and nares microbiota of healthy children and adults." Genome Med. 2012 Oct 10;4(10):77. doi: 10.1186/gm378. eCollection 2012. [23050952] -
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