Cleaning the connectivity pairwise agreement script #1017
Workflow file for this run
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| name: Scilpy test suite | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| MPLBACKEND: agg | |
| OPENBLAS_NUM_THREADS: 1 | |
| jobs: | |
| test: | |
| runs-on: scilus-runners | |
| if: github.repository == 'scilus/scilpy' | |
| steps: | |
| - name: Checkout repository at merge | |
| uses: actions/checkout@v4 | |
| - name: Fetch python version from repository | |
| id: python-selector | |
| run: echo "python-version=$(head -1 .python-version)" >> $GITHUB_OUTPUT | |
| - name: Set up Python for Scilpy | |
| uses: actions/[email protected] | |
| with: | |
| python-version: ${{ steps.python-selector.outputs.python-version }} | |
| cache: 'pip' | |
| - name: Install non-python dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y \ | |
| build-essential \ | |
| curl \ | |
| git \ | |
| libblas-dev \ | |
| liblapack-dev \ | |
| libfreetype6-dev | |
| - name: Install Scilpy | |
| run: | | |
| export SETUPTOOLS_USE_DISTUTILS=stdlib | |
| python -m pip install --upgrade pip wheel | |
| python -m pip install --upgrade "setuptools<71.0.0" | |
| python -m pip install -e . | |
| - name: Run tests | |
| run: | | |
| export C_INCLUDE_PATH=$pythonLocation/include/python${{ steps.python-selector.outputs.python-version }}:$C_INCLUDE_PATH | |
| pytest --cov-report term-missing:skip-covered | |
| - name: Save test results and coverage | |
| uses: actions/upload-artifact@v4 | |
| id: test-coverage-results | |
| with: | |
| name: test-coverage-${{ github.run_id }} | |
| retention-days: 1 | |
| include-hidden-files: true | |
| path: | | |
| .coverage | |
| .test_reports/ | |
| coverage: | |
| runs-on: scilus-runners | |
| if: github.repository == 'scilus/scilpy' | |
| needs: test | |
| steps: | |
| - name: Checkout repository at merge | |
| uses: actions/checkout@v4 | |
| - name: Set up Python for codecov upload | |
| uses: actions/[email protected] | |
| with: | |
| python-version: '3.10' | |
| cache: 'pip' | |
| - name: Install pycoverage | |
| run: pip install coverage | |
| - name: Download test results and coverage | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: test-coverage-${{ github.run_id }} | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| flags: unittests | |
| name: scilpy-unittests-${{ github.run_id }}-${{ github.run_attempt }} | |
| verbose: true | |
| fail_ci_if_error: true | |
| plugin: pycoverage | |