Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

DefaultOMEMetadataService always assumes 3 non-planar axes in the input metadata #26

Open
gab1one opened this issue Jun 29, 2016 · 0 comments
Labels

Comments

@gab1one
Copy link
Contributor

gab1one commented Jun 29, 2016

I am trying to convert the metadata of a 2D ics image with one color channel into OMEXML. I am calling the metadata translator service: SCIFIO.translator().translate(meta, omexml, false); code
This will find the ICSOMETranslator.

In function translateFormatMetadata of this class, the populatePixels() method of the OMEMetadataService is called with the doPlane switch set to true, resulting in an ArrayIndexOutOfBoundsException here. Because the MetadataService expects 3 non-planar axes in the input metadata.

Is there a way to prevent this from happening on my side?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

1 participant