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Update Dockerfile
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Updated MetFrag files to remove bad elements causing formula errors. Tested with MetFragCL and should work. Issues posted: see ipb-halle#47 and ipb-halle#46
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schymane committed Jul 23, 2020
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4 changes: 2 additions & 2 deletions Dockerfile
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Expand Up @@ -26,8 +26,8 @@ RUN wget -q -O- https://msbi.ipb-halle.de/~sneumann/file_databases.tgz | tar -C
wget -q https://zenodo.org/record/3547718/files/COCONUT4MetFrag.csv; \
wget -q https://zenodo.org/record/3611238/files/PubChemLite_14Jan2020_tier0.csv; \
wget -q https://zenodo.org/record/3611238/files/PubChemLite_14Jan2020_tier1.csv; \
wget -q https://zenodo.org/record/3956587/files/HBM4EU_CECscreen_MF_1Jul2020.csv; \
wget -q https://zenodo.org/record/3956587/files/HBM4EU_CECscreen_MF_1Jul2020_plusTPs.csv; \
wget -q https://zenodo.org/record/3957497/files/HBM4EU_CECscreen_MF_1Jul2020.csv; \
wget -q https://zenodo.org/record/3957497/files/HBM4EU_CECscreen_MF_1Jul2020_plusTPs.csv; \
wget -q https://zenodo.org/record/3564602/files/BloodExposomeDB_03Dec2019.csv

RUN printf '#!/bin/sh \n\
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