From e65b46df24cadf772a1656951f69b9de9c7b056d Mon Sep 17 00:00:00 2001
From: Leon Rauschning <99650940+lrauschning@users.noreply.github.com>
Date: Thu, 19 Dec 2024 15:49:52 +0800
Subject: [PATCH] activate in call function, maybe the shell is reinitialized?

---
 .github/workflows/run_test_example.sh | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/run_test_example.sh b/.github/workflows/run_test_example.sh
index fc54f52..6332190 100755
--- a/.github/workflows/run_test_example.sh
+++ b/.github/workflows/run_test_example.sh
@@ -15,4 +15,5 @@
 ## run using source to preserve alias
 #source ./example/example_workflow.sh
 
+$CONDA/bin/conda activate msyd
 $(tail -n +2 ./example/example_workflow.sh | sed -e 's/^syri/python <(echo "import syri.scripts.syri;syri.scripts.syri.main()")/'  -e 's/^minimap2/.\/minimap2/' )