diff --git a/.github/workflows/build.yml b/.github/workflows/build.yml index 7b0ca65..b91e0c2 100644 --- a/.github/workflows/build.yml +++ b/.github/workflows/build.yml @@ -29,11 +29,11 @@ jobs: run: | python -m pip install --upgrade pip setuptools # manually install syris dependencies - # seems to be no longer necessary with github install - #pip install Cython numpy pandas scipy psutil igraph longestrunsubsequence pysam pulp + # the python version spoofing requires the --no-deps flag, so this is necessary + pip install Cython numpy pandas scipy psutil igraph longestrunsubsequence pysam pulp # manually use pip to install syri from github, as it isn't on pypi # spoof python version to get around bounds check - pip install 'git+https://github.com/schneebergerlab/syri.git' --python-version '3.10' #--no-warn-conflicts + pip install 'git+https://github.com/schneebergerlab/syri.git' --python-version '3.10' --no-deps --no-warn-conflicts if [ -f requirements.txt ]; then pip install -r requirements.txt; fi - name: Build package run: pip install .