From 99628b84c25478c64f3269dceb00fb0988ff3267 Mon Sep 17 00:00:00 2001
From: Leon Rauschning <99650940+lrauschning@users.noreply.github.com>
Date: Thu, 12 Dec 2024 15:56:51 +0800
Subject: [PATCH] change to proper tail command

---
 .github/workflows/run_test_example.sh | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/run_test_example.sh b/.github/workflows/run_test_example.sh
index fc4db71..bcb18f0 100755
--- a/.github/workflows/run_test_example.sh
+++ b/.github/workflows/run_test_example.sh
@@ -4,7 +4,8 @@
 # hacky way to hopefully alias the calls
 # normal alias does not seem to work in GitHub CI
 # necessary, as the hacky git install does not install the CLI entrypoints
-#echo "python <(echo 'import syri.scripts.syri;syri.scripts.syri.main()')" > syri
+#echo "#!/bin/python" > syri
+#echo "import syri.scripts.syri;syri.scripts.syri.main()" >> syri
 #chmod +x ./syri
 #echo "minimap2.py" > ./minimap2
 #chmod +x ./minimap2
@@ -14,6 +15,5 @@
 ## run using source to preserve alias
 #source ./example/example_workflow.sh
 
-$CONDA/bin/conda install -c conda-forge -c bioconda "bioconda::minimap2"
-$(tail -n -1 ./example/example_workflow.sh |\
+$(tail -n +2 ./example/example_workflow.sh |\
 	sed -e 's/^syri/python <(echo "import syri.scripts.syri;syri.scripts.syri.main()")/' )