From 94f9e7f89bc1e7415cdd427785cd699b42d6921e Mon Sep 17 00:00:00 2001
From: Leon Rauschning <99650940+lrauschning@users.noreply.github.com>
Date: Tue, 10 Dec 2024 17:30:08 +0800
Subject: [PATCH] add conda dep install to integrated test

---
 .github/workflows/test_example.yml | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.github/workflows/test_example.yml b/.github/workflows/test_example.yml
index 3b20569..9f02a71 100644
--- a/.github/workflows/test_example.yml
+++ b/.github/workflows/test_example.yml
@@ -21,6 +21,9 @@ jobs:
       uses: schneebergerlab/msyd@main
       with:
         python-version: "3.12"
+    - name: Install other tools using conda
+      run: |
+        $CONDA/bin/conda install -c conda-forge -c bioconda "minimap2"
     - name: Test example_run.sh
       run: |
         # alias to a call launching the syri entrypoint from python