From 92820c1b793667458da1c1822878d2c8dd18f6a2 Mon Sep 17 00:00:00 2001
From: Leon Rauschning <99650940+lrauschning@users.noreply.github.com>
Date: Thu, 19 Dec 2024 15:55:31 +0800
Subject: [PATCH] add conda init before activate

---
 .github/workflows/run_test_example.sh | 1 +
 1 file changed, 1 insertion(+)

diff --git a/.github/workflows/run_test_example.sh b/.github/workflows/run_test_example.sh
index 6332190..0b0412b 100755
--- a/.github/workflows/run_test_example.sh
+++ b/.github/workflows/run_test_example.sh
@@ -15,5 +15,6 @@
 ## run using source to preserve alias
 #source ./example/example_workflow.sh
 
+$CONDA/bin/conda init
 $CONDA/bin/conda activate msyd
 $(tail -n +2 ./example/example_workflow.sh | sed -e 's/^syri/python <(echo "import syri.scripts.syri;syri.scripts.syri.main()")/'  -e 's/^minimap2/.\/minimap2/' )