From 03c6094bc93e37048e574fcf71db4d5cc71292f2 Mon Sep 17 00:00:00 2001
From: Leon Rauschning <99650940+lrauschning@users.noreply.github.com>
Date: Thu, 12 Dec 2024 16:09:11 +0800
Subject: [PATCH] eliminate second cript call

---
 .github/workflows/test_example.yml | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/test_example.yml b/.github/workflows/test_example.yml
index b42fcca..18516d9 100644
--- a/.github/workflows/test_example.yml
+++ b/.github/workflows/test_example.yml
@@ -25,5 +25,7 @@ jobs:
       run: |
         $CONDA/bin/conda install -c conda-forge -c bioconda "bioconda::minimap2"
     - name: Test example_run.sh
-      run: ./.github/workflows/run_test_example.sh
+      run: |
+        minimap2 -h
+        $(tail -n +2 ./example/example_workflow.sh | sed -e 's/^syri/python <(echo "import syri.scripts.syri;syri.scripts.syri.main()")/' )
       shell: bash