singularity.py3.recipe

Bootstrap: docker
From: ubuntu:20.04

%help
   Singularity image containing all commonly used astro software. This image is built on Ubuntu 20.04.

%environment
    export DEBIAN_FRONTEND=noninteractive

%post
    export DEBIAN_FRONTEND=noninteractive

    # Install common dependencies
    apt-get update \
    && apt-get --yes install --no-install-recommends \
        libblas-dev \
        liblapacke-dev \
        build-essential \
        casacore-data \
        casacore-dev \
        cmake \
        git \
        g++ \
        gfortran \
        python3-casacore \
        python3-dev \
        python3-pip \
        python3-setuptools \
        vim \
        wget \
        libcfitsio-dev \
        libgsl-dev \
        libhdf5-dev \
        libfftw3-dev \
        libboost-dev \
        libboost-date-time-dev \
        libboost-filesystem-dev \
        libboost-program-options-dev \
        libboost-system-dev \
        montage \
        libpng-dev \
        liblua5.3-dev \
    && rm -rf /var/lib/apt/lists/*

    # Install python3 packages
    pip3 install -U pip
    pip3 install -U astroplan numpy astropy matplotlib ipython RMextract jupyter

    # Download NRAO CASA
    pip3 install casatasks==6.5.3.28
    pip3 install casadata

    # Install BDSF
    pip3 install bdsf
    
    # Install breizorro
    pip3 install breizorro

    # Install mosaic-queen
    pip3 install mosaic-queen

    # Install Everybeam
    cd / && git clone https://git.astron.nl/RD/EveryBeam.git \
    && cd EveryBeam && git checkout v0.5.3 \
    && mkdir build && cd build \
    && cmake ../ \
    && make -j $threads && make install \
    && cd / && rm -rf EveryBeam

    # Install IDG
    cd / && git clone https://gitlab.com/astron-idg/idg.git \
    && cd idg && git checkout 1.2.0 \
    && mkdir build && cd build \
    && cmake \
      -DBUILD_LIB_CUDA=Off \
      ../ \
    && make && make install && cd / && rm -rf idg

    # Install wsclean
    cd / && git clone https://gitlab.com/aroffringa/wsclean.git \
    && cd wsclean && git checkout v3.4 \
    && mkdir build && cd build \
    && cmake ../ \
    && make -j 4 && make install \
    && cd / && rm -rf wsclean

    # Install AOFlagger
    cd / && git clone https://gitlab.com/aroffringa/aoflagger.git \
    && cd aoflagger && git checkout v3.4.0 \
    && mkdir build && cd build \
    && cmake ../ \
    && make -j 4 && make install \
    && cd / && rm -rf aoflagger
    
    # Install DP3
    cd / && git clone https://github.com/lofar-astron/DP3.git \
    && cd DP3 && git checkout v6.0 \
    && mkdir build && cd build \
    && cmake ../ \
    && make -j 4 && make install \
    && cd / && rm -rf DP3

    # Install dysco
    cd / && git clone https://github.com/aroffringa/dysco.git \
    && cd dysco && git checkout v1.2 \
    && mkdir build && cd build \
    && cmake ../ \
    && make -j 4 && make install \
    && cd / && rm -rf dysco