rmf_pdb fails

[shruthivis]

Is the build/bin/rmf_pdb executable supposed to work? It fails for my RMF: prints out an empty PDB with
MODEL 1
ENDMDL

Example RMF is here /netapp/sali/shruthi/test.rmf

[benmwebb]

All the executables are supposed to work ;) But are you sure you don't mean pdb_rmf? It converts a PDB file into an RMF - since RMF is a superset of PDB the reverse transformation is generally not possible.

[shruthivis]

No I actually mean rmf_pdb: there is such an executable in build/bin for
me. I just wanted an easy way to get the xyzr's for all the beads in my
system, and was wondering if rmfs could be converted to pdb.

On Fri, Mar 6, 2015 at 5:07 PM, Ben Webb [email protected] wrote:

All the executables are supposed to work ;) But are you sure you don't
mean pdb_rmf? It converts a PDB file into an RMF - since RMF is a
superset of PDB the reverse transformation is generally not possible.

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[benmwebb]

Ah, right - that's not in IMP, but in RMF. It only extracts the atoms from an RMF file, so if you only have beads, an empty PDB file is what you'll get.

[shruthivis]

Got it, thanks!

[benmwebb]

See also salilab/rmf#122.