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How to generate sequences of a particular family using PROGEN2? #27

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Sireesiru opened this issue Mar 2, 2023 · 2 comments
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@Sireesiru
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Hello,
I would like to use PROGEN2 package to generate CAS (CRISPR -CAS) family of proteins. How can I use sample.py for this?
The paper says that PROGEN2 generates sequences in controlled fashion using tags. What is the tag for CAS family?
In the following command:
python3 sample.py --model ${model} --t 0.8 --p 0.9 --max-length 1024 --num-samples 2 --context "1'
what is context? is this the tags?

@Sireesiru Sireesiru changed the title How to generate sequences of a particular family? How to generate sequences of a particular family using PROGEN2? Mar 2, 2023
@ZeroKeng
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Hello, I would like to use PROGEN2 package to generate CAS (CRISPR -CAS) family of proteins. How can I use sample.py for this? The paper says that PROGEN2 generates sequences in controlled fashion using tags. What is the tag for CAS family? In the following command: python3 sample.py --model ${model} --t 0.8 --p 0.9 --max-length 1024 --num-samples 2 --context "1' what is context? is this the tags?

I would like to know the answer to this question too. LOL

@Admire7494
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Hello, I would like to use PROGEN2 package to generate CAS (CRISPR -CAS) family of proteins. How can I use sample.py for this? The paper says that PROGEN2 generates sequences in controlled fashion using tags. What is the tag for CAS family? In the following command: python3 sample.py --model ${model} --t 0.8 --p 0.9 --max-length 1024 --num-samples 2 --context "1' what is context? is this the tags?

I would like to know the answer to this question too. LOL

Me too!

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